Variant report

Variant	rs794260
Chromosome Location	chr6:119330002-119330003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1022708	0.80[JPT][hapmap]
rs11153782	0.80[JPT][hapmap]
rs11967399	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11967889	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12526935	0.88[ASN][1000 genomes]
rs1413906	0.87[ASN][1000 genomes]
rs1570493	0.88[ASN][1000 genomes]
rs17513308	0.89[ASN][1000 genomes]
rs1762200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2051056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2051057	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2295709	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs2357020	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2357030	0.83[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs2782575	0.97[ASN][1000 genomes]
rs2797352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284919	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs2884078	0.88[CHB][hapmap];0.89[ASN][1000 genomes]
rs4946373	0.80[JPT][hapmap]
rs4946382	0.80[JPT][hapmap]
rs4946383	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4946388	0.87[ASN][1000 genomes]
rs4946389	0.87[ASN][1000 genomes]
rs4946390	0.87[ASN][1000 genomes]
rs57100274	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57285368	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6910327	0.89[JPT][hapmap]
rs6910850	0.84[CHB][hapmap]
rs6918844	0.80[JPT][hapmap]
rs6931558	0.86[ASN][1000 genomes]
rs6939937	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs7742473	0.88[JPT][hapmap]
rs7756475	0.87[ASN][1000 genomes]
rs7764418	0.89[ASN][1000 genomes]
rs794259	0.82[JPT][hapmap]
rs794261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs794262	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs794263	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs794264	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs794266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs794614	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs808028	0.87[ASN][1000 genomes]
rs813812	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374777	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs9387624	0.80[JPT][hapmap]
rs9387629	0.88[ASN][1000 genomes]
rs9387630	0.86[ASN][1000 genomes]
rs9398499	0.88[ASN][1000 genomes]
rs9401113	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9401118	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs9481881	0.87[ASN][1000 genomes]
rs9489526	0.88[JPT][hapmap]
rs9489543	0.82[JPT][hapmap]
rs954753	0.87[ASN][1000 genomes]
rs962393	0.82[CHB][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
2	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
3	chr6:119293200-119345400	Weak transcription	Lung	lung
4	chr6:119294200-119330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:119300600-119344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:119300800-119342600	Weak transcription	Brain Anterior Caudate	brain
7	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:119315400-119330800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:119318600-119344200	Weak transcription	Fetal Lung	lung
10	chr6:119319400-119330200	Weak transcription	Ovary	ovary
11	chr6:119319600-119333600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr6:119319800-119342600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:119322600-119337800	Weak transcription	Placenta	Placenta
14	chr6:119324400-119331000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:119324400-119331000	Weak transcription	K562	blood
16	chr6:119324400-119333000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:119325200-119339800	Weak transcription	Primary T cells from cord blood	blood
18	chr6:119325400-119330600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:119325400-119349600	Weak transcription	Brain Angular Gyrus	brain
20	chr6:119326000-119330200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:119327600-119330200	Weak transcription	Adipose Nuclei	Adipose
22	chr6:119327800-119330200	Weak transcription	Fetal Brain Female	brain
23	chr6:119327800-119330800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:119328200-119330800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:119328600-119348800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:119329200-119331600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:119329200-119331600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:119329200-119343400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:119329400-119330200	ZNF genes & repeats	Liver	Liver
30	chr6:119329400-119332400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:119329600-119330200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
32	chr6:119329600-119331400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:119329600-119332400	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:119329800-119331000	ZNF genes & repeats	Fetal Intestine Large	intestine
35	chr6:119329800-119333800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:119330000-119330400	Strong transcription	Fetal Muscle Leg	muscle
37	chr6:119330000-119331200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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