Variant report

Variant	rs1413906
Chromosome Location	chr6:119365529-119365530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119363262..119365656-chr6:119366667..119368458,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11967399	0.82[ASN][1000 genomes]
rs11967889	0.82[ASN][1000 genomes]
rs12526935	0.99[ASN][1000 genomes]
rs1570493	0.97[ASN][1000 genomes]
rs17513308	0.98[ASN][1000 genomes]
rs1762200	0.85[ASN][1000 genomes]
rs2357020	0.81[ASN][1000 genomes]
rs2357030	0.96[ASN][1000 genomes]
rs2782575	0.86[ASN][1000 genomes]
rs2797352	0.84[ASN][1000 genomes]
rs2884078	0.98[ASN][1000 genomes]
rs4946388	0.96[ASN][1000 genomes]
rs4946389	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4946390	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57100274	0.80[ASN][1000 genomes]
rs57285368	0.82[ASN][1000 genomes]
rs6931558	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7756475	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764418	0.98[ASN][1000 genomes]
rs794260	0.87[ASN][1000 genomes]
rs794261	0.85[ASN][1000 genomes]
rs794262	0.85[ASN][1000 genomes]
rs794263	0.85[ASN][1000 genomes]
rs794264	0.85[ASN][1000 genomes]
rs794266	0.85[ASN][1000 genomes]
rs794605	0.82[EUR][1000 genomes]
rs808028	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs813812	0.87[ASN][1000 genomes]
rs9374777	0.96[ASN][1000 genomes]
rs9387629	0.99[ASN][1000 genomes]
rs9387630	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9398499	0.99[ASN][1000 genomes]
rs9401113	0.82[ASN][1000 genomes]
rs9401118	0.99[ASN][1000 genomes]
rs9481881	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954753	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119356400-119368800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:119356800-119366600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:119363400-119366600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:119363800-119366200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:119364200-119366400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:119364400-119366400	Enhancers	K562	blood
8	chr6:119364400-119366600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:119364600-119365800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:119365000-119366000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:119365200-119373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:119365400-119365600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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