Variant report

Variant	rs4946389
Chromosome Location	chr6:119368613-119368614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119366419..119369327-chr6:119386975..119389213,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11967399	0.82[ASN][1000 genomes]
rs11967889	0.82[ASN][1000 genomes]
rs12526935	0.99[ASN][1000 genomes]
rs1413906	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570493	0.97[ASN][1000 genomes]
rs17513308	0.98[ASN][1000 genomes]
rs1762200	0.85[ASN][1000 genomes]
rs1775619	0.82[CHB][hapmap]
rs2051056	0.88[CHB][hapmap]
rs2051057	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2295709	0.82[CHB][hapmap]
rs2357020	0.81[ASN][1000 genomes]
rs2357030	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs2782575	0.86[ASN][1000 genomes]
rs2797352	0.84[ASN][1000 genomes]
rs284919	0.84[CEU][hapmap]
rs2884078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4946383	0.83[CHB][hapmap]
rs4946388	0.96[ASN][1000 genomes]
rs4946390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57100274	0.80[ASN][1000 genomes]
rs57285368	0.82[ASN][1000 genomes]
rs6929403	0.95[JPT][hapmap]
rs6931558	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs706978	0.82[CHB][hapmap]
rs7756475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764418	0.98[ASN][1000 genomes]
rs794260	0.87[ASN][1000 genomes]
rs794261	0.85[ASN][1000 genomes]
rs794262	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs794263	0.85[ASN][1000 genomes]
rs794264	0.85[ASN][1000 genomes]
rs794266	0.85[ASN][1000 genomes]
rs794605	0.80[EUR][1000 genomes]
rs794614	0.88[CHB][hapmap]
rs808028	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs813812	0.87[ASN][1000 genomes]
rs9374777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9387624	0.90[JPT][hapmap]
rs9387629	0.99[ASN][1000 genomes]
rs9387630	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9398499	0.99[ASN][1000 genomes]
rs9401113	0.82[ASN][1000 genomes]
rs9401118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9481881	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs954753	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119356400-119368800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:119365200-119373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:119366800-119373600	Weak transcription	Pancreas	Pancrea
5	chr6:119367200-119370800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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