Variant report

Variant	rs57100274
Chromosome Location	chr6:119314775-119314776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119314602..119316807-chr6:119322501..119324038,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11967399	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11967889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12526935	0.81[ASN][1000 genomes]
rs1413906	0.80[ASN][1000 genomes]
rs1570493	0.81[ASN][1000 genomes]
rs17513308	0.82[ASN][1000 genomes]
rs1762200	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2051056	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2051057	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2295709	0.82[ASN][1000 genomes]
rs2357020	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2357030	0.84[ASN][1000 genomes]
rs2782575	0.94[ASN][1000 genomes]
rs2797352	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2884078	0.82[ASN][1000 genomes]
rs4946383	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4946388	0.80[ASN][1000 genomes]
rs4946389	0.80[ASN][1000 genomes]
rs4946390	0.80[ASN][1000 genomes]
rs57285368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7756475	0.80[ASN][1000 genomes]
rs7764418	0.82[ASN][1000 genomes]
rs794260	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs794261	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs794262	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs794263	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs794264	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs794266	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs794614	0.84[ASN][1000 genomes]
rs808028	0.80[ASN][1000 genomes]
rs813812	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387629	0.81[ASN][1000 genomes]
rs9398499	0.81[ASN][1000 genomes]
rs9401113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9401118	0.81[ASN][1000 genomes]
rs9481881	0.80[ASN][1000 genomes]
rs954753	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3340393	chr6:119311737-119316304	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	esv3442213	chr6:119311747-119316306	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
2	chr6:119287200-119326600	Weak transcription	Fetal Brain Female	brain
3	chr6:119287400-119330000	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:119288800-119315000	Weak transcription	Fetal Intestine Large	intestine
5	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
6	chr6:119293200-119345400	Weak transcription	Lung	lung
7	chr6:119294200-119330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:119300600-119344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:119300800-119319600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:119300800-119342600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:119301000-119321800	Weak transcription	Placenta	Placenta
12	chr6:119301400-119319200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:119311400-119315800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:119313000-119329800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:119314200-119318600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:119314200-119318800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:119314400-119315400	Enhancers	HepG2	liver
18	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:119314600-119315000	Weak transcription	Pancreas	Pancrea
20	chr6:119314600-119315200	Enhancers	Liver	Liver
21	chr6:119314600-119315400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:119314600-119315400	Enhancers	Fetal Intestine Small	intestine

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