Variant report

Variant	rs794611
Chromosome Location	chr6:119277065-119277066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119276132..119278287-chr6:119280565..119283186,2	MCF-7	breast:
2	chr6:119254712..119256329-chr6:119275962..119277477,2	K562	blood:
3	chr6:119214619..119216603-chr6:119276570..119279269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253194	Chromatin interaction
ENSG00000111875	Chromatin interaction
ENSG00000111877	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10080855	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10456919	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1087453	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1087454	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1087455	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153785	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12190974	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12191819	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12194515	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12195153	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12196440	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12197931	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12200499	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12203353	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12203542	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12206826	0.93[ASN][1000 genomes]
rs12210027	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12212179	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12214434	0.93[EUR][1000 genomes]
rs12216519	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1321836	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1342793	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1407205	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1407206	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1418712	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1539434	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1775619	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2357022	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2782574	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2797355	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs284914	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs284915	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284918	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs284920	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs376225	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3798594	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798595	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3798599	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs388987	0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs409849	0.80[ASN][1000 genomes]
rs41292550	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41292554	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4946384	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55810806	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56794995	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56895036	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs603770	0.82[ASN][1000 genomes]
rs6935641	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6937499	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706971	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs706978	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs706979	0.81[ASN][1000 genomes]
rs72966811	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72966851	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72966873	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72966896	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72970448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768995	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs768996	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7768348	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs794250	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs794252	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs794253	0.91[AMR][1000 genomes]
rs794254	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs794255	0.82[ASN][1000 genomes]
rs794259	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs794606	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794607	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794608	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794614	0.80[ASN][1000 genomes]
rs797002	0.82[ASN][1000 genomes]
rs797017	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811201	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811584	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9320673	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9481862	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9481867	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9481868	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9481869	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9481870	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9481871	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9481872	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9481877	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481878	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489530	0.86[AMR][1000 genomes]
rs9489531	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9489535	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9489536	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9489537	0.93[ASN][1000 genomes]
rs9489539	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9489540	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9489541	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9489543	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9489544	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9489547	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119272000-119281000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:119273400-119277600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:119275200-119286800	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:119277000-119288400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links