Variant report

Variant	rs706979
Chromosome Location	chr6:119387612-119387613
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119383826..119386462-chr6:119386776..119389889,4	K562	blood:
2	chr6:119381731..119385519-chr6:119386330..119388707,4	K562	blood:
3	chr6:119366419..119369327-chr6:119386975..119389213,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10080855	0.80[EUR][1000 genomes]
rs10456919	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1087455	0.81[ASN][1000 genomes]
rs12189950	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12190491	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12190974	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12191819	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs12193093	0.86[ASN][1000 genomes]
rs12194515	0.80[EUR][1000 genomes]
rs12195153	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12195334	0.87[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs12195400	0.86[ASN][1000 genomes]
rs12196440	0.80[EUR][1000 genomes]
rs12197931	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs12204929	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12206826	0.93[CHB][hapmap]
rs12212179	0.80[EUR][1000 genomes]
rs12214184	0.85[ASN][1000 genomes]
rs12214265	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1321836	0.80[EUR][1000 genomes]
rs1342793	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1407205	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs1407206	0.80[EUR][1000 genomes]
rs1418712	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1539434	0.89[ASN][1000 genomes]
rs1591368	0.86[ASN][1000 genomes]
rs1591369	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1775619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2357022	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2357030	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2782574	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2797355	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2797357	0.92[ASN][1000 genomes]
rs284914	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap]
rs2884078	0.82[CHB][hapmap]
rs3798594	0.80[EUR][1000 genomes]
rs3798595	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs3798599	0.80[EUR][1000 genomes]
rs41292550	0.80[EUR][1000 genomes]
rs41292554	0.80[EUR][1000 genomes]
rs4946384	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs55810806	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55919736	0.86[ASN][1000 genomes]
rs56347939	0.86[ASN][1000 genomes]
rs603770	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6937499	0.89[ASN][1000 genomes]
rs706971	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap]
rs706978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72953079	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72953080	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72966851	0.80[EUR][1000 genomes]
rs72966873	0.80[EUR][1000 genomes]
rs72966896	0.80[EUR][1000 genomes]
rs72970448	0.81[ASN][1000 genomes]
rs768995	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[EUR][1000 genomes]
rs768996	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs7745460	0.86[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs7768348	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs794250	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs794252	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs794253	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs794254	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs794255	0.97[ASN][1000 genomes]
rs794259	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs794606	0.81[ASN][1000 genomes]
rs794607	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs794608	0.81[ASN][1000 genomes]
rs794611	0.81[ASN][1000 genomes]
rs797002	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs797017	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs811201	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs811584	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320673	0.89[ASN][1000 genomes]
rs9374777	0.82[CHB][hapmap]
rs9401118	0.82[CHB][hapmap]
rs9481867	0.80[EUR][1000 genomes]
rs9481868	0.80[EUR][1000 genomes]
rs9481869	0.80[EUR][1000 genomes]
rs9481870	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs9481871	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs9481872	0.80[EUR][1000 genomes]
rs9481877	0.81[ASN][1000 genomes]
rs9481878	0.81[ASN][1000 genomes]
rs9489535	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes]
rs9489536	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs9489537	0.93[CHB][hapmap]
rs9489539	0.80[EUR][1000 genomes]
rs9489540	0.80[EUR][1000 genomes]
rs9489543	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs9489544	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs9489547	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	nsv528632	chr6:119380885-119397860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119378200-119388400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:119385000-119397200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:119385800-119388800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:119386600-119388000	Enhancers	Fetal Lung	lung
5	chr6:119387000-119388200	Enhancers	K562	blood
6	chr6:119387200-119387800	Enhancers	Fetal Intestine Small	intestine
7	chr6:119387200-119389200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:119387400-119387800	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:119387400-119388600	Enhancers	Fetal Intestine Large	intestine
10	chr6:119387600-119388000	Enhancers	Fetal Heart	heart

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