Variant report

Variant	rs7768348
Chromosome Location	chr6:119359948-119359949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119255593..119258017-chr6:119358336..119360410,2	K562	blood:
2	chr6:119357800..119360745-chr6:119397203..119399369,2	K562	blood:
3	chr6:119333259..119336031-chr6:119357744..119360082,2	K562	blood:

Variant related genes	Relation type
ENSG00000253194	Chromatin interaction
ENSG00000111877	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10080855	0.86[AMR][1000 genomes]
rs10456919	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1087453	0.82[AMR][1000 genomes]
rs1087454	0.86[AMR][1000 genomes]
rs1087455	0.81[ASN][1000 genomes]
rs11153785	0.82[AMR][1000 genomes]
rs12189950	0.85[ASN][1000 genomes]
rs12190491	0.85[ASN][1000 genomes]
rs12190974	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12193093	0.82[ASN][1000 genomes]
rs12194515	0.86[AMR][1000 genomes]
rs12195153	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12195334	0.82[ASN][1000 genomes]
rs12195400	0.82[ASN][1000 genomes]
rs12197931	0.86[AMR][1000 genomes]
rs12200499	0.86[AMR][1000 genomes]
rs12204929	0.85[ASN][1000 genomes]
rs12214184	0.81[ASN][1000 genomes]
rs12214265	0.84[ASN][1000 genomes]
rs1342793	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1418712	0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1539434	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1591368	0.82[ASN][1000 genomes]
rs1775619	0.95[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2357022	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2782574	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2797355	0.95[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2797357	0.94[ASN][1000 genomes]
rs4946384	0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs55810806	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55919736	0.82[ASN][1000 genomes]
rs56347939	0.82[ASN][1000 genomes]
rs603770	0.99[ASN][1000 genomes]
rs6937499	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs706978	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs706979	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72953079	0.85[ASN][1000 genomes]
rs72953080	0.82[ASN][1000 genomes]
rs72966873	0.86[AMR][1000 genomes]
rs72970448	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7745460	0.83[ASN][1000 genomes]
rs794250	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs794252	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs794253	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs794254	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs794255	0.99[ASN][1000 genomes]
rs794259	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs794606	0.81[ASN][1000 genomes]
rs794607	0.81[ASN][1000 genomes]
rs794608	0.81[ASN][1000 genomes]
rs794611	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs797002	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs797017	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs811201	0.81[ASN][1000 genomes]
rs811584	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9320673	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9481871	0.86[AMR][1000 genomes]
rs9481877	0.81[ASN][1000 genomes]
rs9481878	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9489540	0.86[AMR][1000 genomes]
rs9489543	0.86[AMR][1000 genomes]
rs9489544	0.82[AMR][1000 genomes]
rs9489547	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119352400-119361000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:119354000-119361000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:119356400-119368800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:119356600-119360000	Enhancers	K562	blood
6	chr6:119356600-119360800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:119356800-119360800	Weak transcription	Placenta	Placenta
8	chr6:119356800-119366600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:119357200-119360800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:119357200-119361200	Weak transcription	Adipose Nuclei	Adipose
11	chr6:119357200-119361400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:119357400-119361600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:119357800-119361400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:119358000-119363400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:119358400-119360000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:119358600-119360600	Weak transcription	Fetal Lung	lung
18	chr6:119359400-119360000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:119359400-119364400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:119359600-119360200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr6:119359600-119360600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:119359600-119361000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:119359600-119361800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:119359800-119360200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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