Variant report

Variant	rs603770
Chromosome Location	chr6:119366202-119366203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10456919	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1087455	0.82[ASN][1000 genomes]
rs12189950	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12190491	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12190974	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191819	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.81[TSI][hapmap]
rs12193093	0.83[ASN][1000 genomes]
rs12195153	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12195334	0.81[CHB][hapmap];0.84[CHD][hapmap];0.83[ASN][1000 genomes]
rs12195400	0.83[ASN][1000 genomes]
rs12197931	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.81[TSI][hapmap]
rs12204929	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12206826	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs12214184	0.82[ASN][1000 genomes]
rs12214265	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1342793	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407205	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs1418712	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539434	0.90[ASN][1000 genomes]
rs1591368	0.83[ASN][1000 genomes]
rs1591369	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1775619	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2357022	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2782574	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797355	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2797357	0.95[ASN][1000 genomes]
rs284914	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.81[TSI][hapmap]
rs3798595	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.81[TSI][hapmap]
rs4946384	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[ASN][1000 genomes]
rs55810806	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55919736	0.83[ASN][1000 genomes]
rs56347939	0.83[ASN][1000 genomes]
rs6937499	0.90[ASN][1000 genomes]
rs706971	1.00[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs706978	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706979	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72953079	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72953080	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72970448	0.82[ASN][1000 genomes]
rs768995	1.00[CEU][hapmap]
rs768996	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs7745460	0.81[CHB][hapmap];0.84[CHD][hapmap];0.84[ASN][1000 genomes]
rs7768348	0.99[ASN][1000 genomes]
rs794250	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794252	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794253	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs794254	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs794255	1.00[ASN][1000 genomes]
rs794259	1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs794606	0.82[ASN][1000 genomes]
rs794607	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.90[TSI][hapmap];0.82[ASN][1000 genomes]
rs794608	0.82[ASN][1000 genomes]
rs794611	0.82[ASN][1000 genomes]
rs797002	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs797017	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs811201	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs811584	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9320673	0.90[ASN][1000 genomes]
rs9481870	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs9481871	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs9481877	0.82[ASN][1000 genomes]
rs9481878	0.82[ASN][1000 genomes]
rs9489535	1.00[CEU][hapmap];0.87[CHB][hapmap]
rs9489536	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.81[TSI][hapmap]
rs9489537	0.87[CHB][hapmap];0.84[CHD][hapmap]
rs9489543	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs9489544	1.00[CEU][hapmap];0.87[CHB][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119356400-119368800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:119356800-119366600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:119363400-119366600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:119364200-119366400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:119364400-119366400	Enhancers	K562	blood
7	chr6:119364400-119366600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:119365200-119373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:119365600-119367200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:119366000-119366400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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