Variant report

Variant	rs12193093
Chromosome Location	chr6:119403874-119403875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr6:119403778-119405163	K562	blood:	n/a	n/a

Variant related genes	Relation type
FAM184A	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10456919	0.86[ASN][1000 genomes]
rs12189950	0.97[ASN][1000 genomes]
rs12190491	0.93[ASN][1000 genomes]
rs12190974	0.83[ASN][1000 genomes]
rs12195153	0.82[ASN][1000 genomes]
rs12195334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204929	0.97[ASN][1000 genomes]
rs12214184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12214265	0.98[ASN][1000 genomes]
rs1342793	0.83[ASN][1000 genomes]
rs1418712	0.83[ASN][1000 genomes]
rs1591368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591369	0.93[ASN][1000 genomes]
rs1775619	0.81[ASN][1000 genomes]
rs2357022	0.82[ASN][1000 genomes]
rs2357161	0.81[ASN][1000 genomes]
rs2782574	0.82[ASN][1000 genomes]
rs2797355	0.82[ASN][1000 genomes]
rs55810806	0.86[ASN][1000 genomes]
rs55919736	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56347939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603770	0.83[ASN][1000 genomes]
rs706978	0.83[ASN][1000 genomes]
rs706979	0.86[ASN][1000 genomes]
rs72953079	0.97[ASN][1000 genomes]
rs72953080	0.96[ASN][1000 genomes]
rs7745460	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7768348	0.82[ASN][1000 genomes]
rs794250	0.83[ASN][1000 genomes]
rs794252	0.83[ASN][1000 genomes]
rs794253	0.82[ASN][1000 genomes]
rs794254	0.83[ASN][1000 genomes]
rs794255	0.83[ASN][1000 genomes]
rs794259	0.82[ASN][1000 genomes]
rs797002	0.83[ASN][1000 genomes]
rs811584	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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