Variant report

Variant	rs56794995
Chromosome Location	chr6:119280703-119280704
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119276132..119278287-chr6:119280565..119283186,2	MCF-7	breast:
2	chr6:119278416..119281627-chr6:119281767..119285560,4	K562	blood:
3	chr6:119253079..119255787-chr6:119280450..119282958,2	K562	blood:

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10080855	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1087453	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1087454	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1087455	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11153785	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12191819	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12194515	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12195153	0.81[ASN][1000 genomes]
rs12196440	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12197931	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12200499	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203353	0.81[ASN][1000 genomes]
rs12203542	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12206826	0.91[ASN][1000 genomes]
rs12210027	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12212179	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12214434	0.81[EUR][1000 genomes]
rs12216519	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1321836	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1407205	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1407206	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1539434	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1775619	0.81[ASN][1000 genomes]
rs2357022	0.81[ASN][1000 genomes]
rs2782574	0.81[ASN][1000 genomes]
rs2797355	0.81[ASN][1000 genomes]
rs284914	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284915	0.84[ASN][1000 genomes]
rs284918	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs284920	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs376225	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3798594	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798595	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798599	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs388987	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs41292550	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41292554	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4946384	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56895036	0.81[EUR][1000 genomes]
rs6935641	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6937499	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs706971	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72966811	0.81[EUR][1000 genomes]
rs72966851	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72966873	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72966896	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72970448	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs768995	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs768996	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs794259	0.83[ASN][1000 genomes]
rs794606	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs794607	0.98[ASN][1000 genomes]
rs794608	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs794611	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs797017	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs811201	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9320673	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9481862	0.81[EUR][1000 genomes]
rs9481867	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9481868	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9481869	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9481870	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9481871	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9481872	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9481877	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9481878	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9489531	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9489535	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9489536	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9489537	0.91[ASN][1000 genomes]
rs9489539	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9489540	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9489541	0.92[ASN][1000 genomes]
rs9489543	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9489544	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9489547	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119272000-119281000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:119275200-119286800	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:119277000-119288400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:119277400-119281200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:119277600-119283200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:119279600-119298200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:119279800-119286200	Weak transcription	Fetal Intestine Small	intestine
8	chr6:119279800-119303600	Weak transcription	Adipose Nuclei	Adipose
9	chr6:119280000-119305200	Weak transcription	Primary T cells from cord blood	blood
10	chr6:119280400-119293000	Weak transcription	H9 Cell Line	embryonic stem cell

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