Variant report

Variant	rs72966811
Chromosome Location	chr6:119115204-119115205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10080855	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1087453	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1087454	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1087455	0.93[EUR][1000 genomes]
rs11153785	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11963765	0.85[ASN][1000 genomes]
rs12191490	0.91[ASN][1000 genomes]
rs12191819	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12194515	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12196440	1.00[EUR][1000 genomes]
rs12197931	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12200499	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12203353	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12203542	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12210027	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12212179	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12214434	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12216519	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1321836	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1407205	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1407206	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1539434	0.93[EUR][1000 genomes]
rs17080617	0.87[ASN][1000 genomes]
rs17080626	0.88[ASN][1000 genomes]
rs2005303	0.88[ASN][1000 genomes]
rs284914	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs284915	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284916	0.91[ASN][1000 genomes]
rs284918	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284920	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs376225	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798594	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3798595	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3798599	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs388987	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs409849	0.80[ASN][1000 genomes]
rs41292550	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs41292554	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4946384	0.90[EUR][1000 genomes]
rs56794995	0.81[EUR][1000 genomes]
rs56895036	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910327	0.86[ASN][1000 genomes]
rs6935641	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6937499	0.93[EUR][1000 genomes]
rs706971	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72966851	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72966873	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72966896	1.00[EUR][1000 genomes]
rs72970448	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs768995	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs768996	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7741194	0.81[ASN][1000 genomes]
rs7742473	0.81[ASN][1000 genomes]
rs7758986	0.81[ASN][1000 genomes]
rs794606	0.90[EUR][1000 genomes]
rs794607	0.84[EUR][1000 genomes]
rs794608	0.90[EUR][1000 genomes]
rs794611	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs797017	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs811201	0.90[EUR][1000 genomes]
rs9320673	0.93[EUR][1000 genomes]
rs9481862	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9481867	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9481868	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9481869	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9481870	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9481871	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9481872	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9481877	0.93[EUR][1000 genomes]
rs9481878	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9489526	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9489530	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9489531	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9489535	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9489536	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9489539	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9489540	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9489543	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9489544	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9489547	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs962393	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv886568	chr6:119044453-119132164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv886569	chr6:119055873-119132164	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119108800-119136000	Weak transcription	Aorta	Aorta
2	chr6:119109200-119121600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:119109400-119121400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:119109800-119116800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:119109800-119117000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:119109800-119117000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:119109800-119121200	Weak transcription	Left Ventricle	heart
8	chr6:119110200-119121600	Weak transcription	Thymus	Thymus
9	chr6:119110600-119116000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:119110600-119116000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:119110800-119116600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr6:119111400-119116000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:119113800-119136000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:119114400-119116800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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