Variant report

Variant	rs415441
Chromosome Location	chr6:119128633-119128634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2295709	0.83[EUR][1000 genomes]
rs284919	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs794614	0.81[EUR][1000 genomes]
rs9374757	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9387609	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9401090	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv886568	chr6:119044453-119132164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv886569	chr6:119055873-119132164	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119108800-119136000	Weak transcription	Aorta	Aorta
2	chr6:119113800-119136000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:119116600-119136200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:119121800-119129800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:119121800-119130600	Weak transcription	Right Atrium	heart
6	chr6:119121800-119133000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:119121800-119134000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:119121800-119134000	Weak transcription	HSMM	muscle
9	chr6:119121800-119134000	Weak transcription	Osteobl	bone
10	chr6:119121800-119136000	Weak transcription	Fetal Intestine Large	intestine
11	chr6:119122000-119136400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:119122000-119147000	Weak transcription	Stomach Mucosa	stomach
13	chr6:119122200-119130400	Weak transcription	Placenta	Placenta
14	chr6:119122200-119130400	Weak transcription	K562	blood
15	chr6:119122200-119131800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:119122200-119133000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:119122200-119135000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:119122200-119136000	Weak transcription	Fetal Intestine Small	intestine
19	chr6:119122200-119136000	Weak transcription	Fetal Stomach	stomach
20	chr6:119122200-119136200	Weak transcription	Esophagus	oesophagus
21	chr6:119122200-119136600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:119122200-119147000	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:119122400-119129600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr6:119122400-119136000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:119122400-119136000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:119122400-119136200	Weak transcription	Pancreas	Pancrea
27	chr6:119122400-119136200	Weak transcription	HepG2	liver
28	chr6:119122400-119136800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:119122400-119146800	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:119122600-119136200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:119122600-119144000	Weak transcription	Brain Angular Gyrus	brain
32	chr6:119125600-119136800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:119125600-119143600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:119125800-119134200	Weak transcription	NHEK	skin
35	chr6:119126000-119131600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:119126000-119134200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:119126200-119130400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:119126200-119130600	Weak transcription	Left Ventricle	heart
39	chr6:119126200-119138800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:119128400-119130400	Weak transcription	Spleen	Spleen
41	chr6:119128600-119128800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr6:119128600-119131800	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr6:119128600-119151600	Weak transcription	Colonic Mucosa	Colon

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