Variant report

Variant	rs669978
Chromosome Location	chr6:119371603-119371604
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10456918	0.84[EUR][1000 genomes]
rs1068588	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11153778	1.00[CEU][hapmap];0.81[GIH][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs11153780	0.84[EUR][1000 genomes]
rs11153791	0.86[EUR][1000 genomes]
rs12204084	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204825	0.86[EUR][1000 genomes]
rs12207663	0.86[EUR][1000 genomes]
rs12211725	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12213327	0.86[EUR][1000 genomes]
rs12213597	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12216130	0.80[EUR][1000 genomes]
rs1334922	0.88[ASN][1000 genomes]
rs1342794	0.88[ASN][1000 genomes]
rs17506361	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1775613	1.00[JPT][hapmap]
rs1775617	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2295709	0.86[CEU][hapmap]
rs284919	0.82[CEU][hapmap]
rs3756939	1.00[JPT][hapmap]
rs4343954	1.00[ASN][1000 genomes]
rs589865	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs590004	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs610960	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs639266	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67182660	0.83[EUR][1000 genomes]
rs6902942	0.86[EUR][1000 genomes]
rs7740819	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7750373	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7771525	0.96[EUR][1000 genomes]
rs7772912	1.00[CEU][hapmap];0.81[GIH][hapmap];0.81[EUR][1000 genomes]
rs7775251	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7775275	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs794249	1.00[JPT][hapmap]
rs794614	0.86[CEU][hapmap]
rs813233	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9372521	1.00[JPT][hapmap]
rs9374756	0.83[EUR][1000 genomes]
rs9374760	0.86[EUR][1000 genomes]
rs9374762	0.86[EUR][1000 genomes]
rs9374769	1.00[JPT][hapmap]
rs9374770	1.00[JPT][hapmap]
rs9374774	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385059	1.00[JPT][hapmap]
rs9385066	1.00[ASN][1000 genomes]
rs9387607	1.00[JPT][hapmap]
rs9387618	1.00[JPT][hapmap]
rs9387627	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs9387631	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9401094	1.00[JPT][hapmap]
rs9401100	1.00[JPT][hapmap]
rs9401101	1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs9401117	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:119365200-119373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:119366800-119373600	Weak transcription	Pancreas	Pancrea
4	chr6:119371200-119372000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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