Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119327639..119329995-chr6:119375600..119378343,2	K562	blood:
2	chr6:119374401..119377359-chr6:119388791..119390597,2	K562	blood:

Variant related genes	Relation type
ENSG00000207982	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1068588	0.88[ASN][1000 genomes]
rs12204084	0.88[ASN][1000 genomes]
rs1334922	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570493	0.81[EUR][1000 genomes]
rs17513308	0.81[EUR][1000 genomes]
rs1775617	0.88[ASN][1000 genomes]
rs4343954	0.88[ASN][1000 genomes]
rs589865	0.96[ASN][1000 genomes]
rs610960	0.81[ASN][1000 genomes]
rs639266	0.88[ASN][1000 genomes]
rs669978	0.88[ASN][1000 genomes]
rs7764418	0.81[EUR][1000 genomes]
rs9374774	0.88[ASN][1000 genomes]
rs9374777	0.84[EUR][1000 genomes]
rs9385066	0.88[ASN][1000 genomes]
rs9387627	0.84[ASN][1000 genomes]
rs9387629	0.83[EUR][1000 genomes]
rs9387631	0.88[ASN][1000 genomes]
rs9401117	0.84[ASN][1000 genomes]
rs9401118	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1342794	ASF1A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119375000-119377600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:119375000-119382000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr6:119375200-119381200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:119375400-119376400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:119375600-119376800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr6:119375800-119377800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:119375800-119381400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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