Variant report

Variant	rs590004
Chromosome Location	chr6:119373199-119373200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10456918	0.84[EUR][1000 genomes]
rs1068588	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11153778	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11153780	0.84[EUR][1000 genomes]
rs11153791	0.86[EUR][1000 genomes]
rs12204084	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12204825	0.86[EUR][1000 genomes]
rs12207663	0.86[EUR][1000 genomes]
rs12211725	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12213327	0.86[EUR][1000 genomes]
rs12213597	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12216130	0.80[EUR][1000 genomes]
rs17506361	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1775617	0.97[EUR][1000 genomes]
rs2295709	0.86[CEU][hapmap]
rs589865	0.88[EUR][1000 genomes]
rs610960	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs639266	0.99[EUR][1000 genomes]
rs669978	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67182660	0.83[EUR][1000 genomes]
rs6902942	0.86[EUR][1000 genomes]
rs7740819	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7750373	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7771525	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7772912	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7775251	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7775275	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs794614	0.86[CEU][hapmap]
rs813233	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9374756	0.83[EUR][1000 genomes]
rs9374760	0.86[EUR][1000 genomes]
rs9374762	0.86[EUR][1000 genomes]
rs9374774	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9387631	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9401101	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:119365200-119373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:119366800-119373600	Weak transcription	Pancreas	Pancrea
4	chr6:119372600-119373600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:119373000-119375800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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