Variant report

Variant	rs9372515
Chromosome Location	chr6:119145996-119145997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1775613	1.00[JPT][hapmap]
rs35917528	0.85[AFR][1000 genomes]
rs3756939	1.00[JPT][hapmap]
rs61299241	0.85[AMR][1000 genomes]
rs7775275	1.00[CHB][hapmap]
rs794249	1.00[JPT][hapmap]
rs9372521	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9374769	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9374770	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9385059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9387602	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9387607	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9387618	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9387623	0.85[AMR][1000 genomes]
rs9387627	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9401092	0.85[AMR][1000 genomes]
rs9401094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9401095	0.85[AMR][1000 genomes]
rs9401096	0.85[AMR][1000 genomes]
rs9401100	1.00[JPT][hapmap]
rs9401101	1.00[JPT][hapmap]
rs9401111	0.85[AMR][1000 genomes]
rs9401112	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119122000-119147000	Weak transcription	Stomach Mucosa	stomach
2	chr6:119122200-119147000	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:119122400-119146800	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:119128600-119151600	Weak transcription	Colonic Mucosa	Colon
5	chr6:119130600-119146400	Weak transcription	Psoas Muscle	Psoas
6	chr6:119132200-119146400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:119132200-119150600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:119132400-119146800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:119132400-119150800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:119133400-119148000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:119133400-119151800	Weak transcription	Fetal Kidney	kidney
12	chr6:119134000-119150600	Weak transcription	Hela-S3	cervix
13	chr6:119134400-119146600	Weak transcription	Brain Anterior Caudate	brain
14	chr6:119134400-119146800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:119134400-119147000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:119134400-119147000	Weak transcription	Small Intestine	intestine
17	chr6:119135000-119146600	Weak transcription	GM12878-XiMat	blood
18	chr6:119135200-119150600	Weak transcription	NHLF	lung
19	chr6:119135400-119146600	Weak transcription	HMEC	breast
20	chr6:119135400-119146600	Weak transcription	NHEK	skin
21	chr6:119135400-119146600	Weak transcription	Osteobl	bone
22	chr6:119135400-119149000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:119135400-119150200	Weak transcription	Brain Substantia Nigra	brain
24	chr6:119135400-119151000	Weak transcription	NH-A	brain
25	chr6:119135400-119151400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:119135600-119146200	Weak transcription	HSMM	muscle
27	chr6:119135800-119146200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:119135800-119151000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:119137200-119146600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:119137200-119146800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:119137200-119149000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:119137400-119146600	Weak transcription	Fetal Brain Female	brain
33	chr6:119137400-119146600	Weak transcription	K562	blood
34	chr6:119137400-119146800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:119137400-119148800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:119137400-119149000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:119137600-119146400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr6:119137600-119146600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:119137600-119147000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:119137600-119147600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:119137800-119149000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:119138000-119147000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr6:119138000-119150800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:119141800-119146400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr6:119142800-119150400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr6:119143000-119150400	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr6:119143200-119147800	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:119143200-119150400	Weak transcription	Fetal Brain Male	brain
49	chr6:119143200-119151000	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:119143400-119150400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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