Variant report

Variant	rs62425854
Chromosome Location	chr6:134397339-134397340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12202742	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423783	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423787	1.00[ASN][1000 genomes]
rs62423788	1.00[ASN][1000 genomes]
rs62425855	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425856	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425858	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425859	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483650	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493824	1.00[ASN][1000 genomes]
rs9493826	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134395600-134405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:134395800-134398200	Weak transcription	HUVEC	blood vessel
3	chr6:134396000-134398800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:134396200-134397600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:134396200-134397600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:134396200-134399600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:134396200-134400800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:134396600-134401000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:134396800-134402800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:134397200-134397400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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