Variant report

Variant	rs62425858
Chromosome Location	chr6:134403027-134403028
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10085284	0.83[AFR][1000 genomes]
rs12202742	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423783	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423787	1.00[ASN][1000 genomes]
rs62423788	1.00[ASN][1000 genomes]
rs62425854	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425856	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483647	0.81[AFR][1000 genomes]
rs9483650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493822	0.83[AFR][1000 genomes]
rs9493824	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9493826	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275229	chr6:134402896-134406409	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134395600-134405000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:134398800-134404200	Enhancers	Placenta	Placenta
3	chr6:134400200-134404600	Enhancers	Primary B cells from cord blood	blood
4	chr6:134400200-134404600	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:134401800-134403200	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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