Variant report

Variant	rs62428833
Chromosome Location	chr6:143263270-143263271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143027223..143029378-chr6:143260889..143263783,2	MCF-7	breast:
2	chr6:143247603..143250539-chr6:143261242..143263408,2	K562	blood:
3	chr6:143261291..143263976-chr6:143267791..143270142,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12212322	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922615	1.00[ASN][1000 genomes]
rs6940880	0.93[EUR][1000 genomes]
rs7758819	0.93[EUR][1000 genomes]
rs7764208	0.92[EUR][1000 genomes]
rs9484687	1.00[ASN][1000 genomes]
rs9484695	1.00[ASN][1000 genomes]
rs9496482	0.91[EUR][1000 genomes]
rs9496483	0.93[EUR][1000 genomes]
rs9496496	1.00[ASN][1000 genomes]
rs9496501	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143248600-143265000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143249000-143263800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:143249400-143264600	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:143249600-143263800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:143255600-143263400	Weak transcription	Fetal Heart	heart
6	chr6:143255600-143263400	Weak transcription	Fetal Intestine Small	intestine
7	chr6:143255600-143263600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:143255800-143263800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:143256000-143263600	Weak transcription	Stomach Mucosa	stomach
10	chr6:143256200-143265000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:143256200-143265000	Weak transcription	Aorta	Aorta
12	chr6:143256600-143264600	Weak transcription	Small Intestine	intestine
13	chr6:143256600-143265000	Weak transcription	Esophagus	oesophagus
14	chr6:143256600-143265000	Weak transcription	Lung	lung
15	chr6:143256800-143265600	Weak transcription	Spleen	Spleen
16	chr6:143257000-143264000	Weak transcription	Adipose Nuclei	Adipose
17	chr6:143257200-143265000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:143257600-143263400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:143257800-143264600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:143258200-143263400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:143259000-143264200	Enhancers	Brain Hippocampus Middle	brain
22	chr6:143259600-143263800	Enhancers	Dnd41	blood
23	chr6:143259600-143265000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:143260000-143263400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:143260000-143263400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:143260000-143263400	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:143260000-143264200	Weak transcription	Fetal Lung	lung
28	chr6:143260000-143264200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr6:143260200-143263400	Enhancers	Primary T cells fromperipheralblood	blood
30	chr6:143260200-143264200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:143260400-143265000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
32	chr6:143260600-143264200	Weak transcription	Brain Anterior Caudate	brain
33	chr6:143260600-143264800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:143260800-143263400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:143261000-143264200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:143261400-143264400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr6:143261400-143264600	Enhancers	Brain Angular Gyrus	brain
38	chr6:143261400-143265000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:143261600-143263400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:143261600-143264200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:143261600-143264400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:143261600-143264600	Enhancers	NHEK	skin
43	chr6:143261600-143264800	Enhancers	NHLF	lung
44	chr6:143261800-143265000	Enhancers	Brain Substantia Nigra	brain
45	chr6:143262000-143263400	Weak transcription	HSMMtube	muscle
46	chr6:143262000-143264000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:143262000-143264000	Weak transcription	Liver	Liver
48	chr6:143262000-143264200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:143262000-143264600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:143262000-143264600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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