Variant report

Variant	rs6940880
Chromosome Location	chr6:143260600-143260601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143255723..143258241-chr6:143260281..143262447,2	MCF-7	breast:
2	chr6:143242273..143244307-chr6:143258591..143261209,2	K562	blood:
3	chr6:143253110..143256505-chr6:143258284..143262684,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12212322	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62428833	0.93[EUR][1000 genomes]
rs7758819	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7764208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496482	1.00[CEU][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9496483	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143248600-143260600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143248600-143265000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:143248800-143260600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:143249000-143263800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:143249200-143261400	Weak transcription	NH-A	brain
6	chr6:143249400-143261600	Weak transcription	HSMMtube	muscle
7	chr6:143249400-143264600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:143249600-143263800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:143250200-143261600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:143250400-143261600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:143251800-143261400	Weak transcription	HMEC	breast
12	chr6:143252000-143261600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:143252000-143261800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:143254400-143261600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:143255600-143261800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:143255600-143263400	Weak transcription	Fetal Heart	heart
17	chr6:143255600-143263400	Weak transcription	Fetal Intestine Small	intestine
18	chr6:143255600-143263600	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:143255800-143263800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:143256000-143263600	Weak transcription	Stomach Mucosa	stomach
21	chr6:143256200-143261600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:143256200-143261600	Weak transcription	Pancreas	Pancrea
23	chr6:143256200-143261800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:143256200-143263000	Weak transcription	HepG2	liver
25	chr6:143256200-143265000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:143256200-143265000	Weak transcription	Aorta	Aorta
27	chr6:143256400-143261400	Weak transcription	Thymus	Thymus
28	chr6:143256400-143261600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:143256600-143261600	Weak transcription	Right Ventricle	heart
30	chr6:143256600-143264600	Weak transcription	Small Intestine	intestine
31	chr6:143256600-143265000	Weak transcription	Esophagus	oesophagus
32	chr6:143256600-143265000	Weak transcription	Lung	lung
33	chr6:143256800-143265600	Weak transcription	Spleen	Spleen
34	chr6:143257000-143264000	Weak transcription	Adipose Nuclei	Adipose
35	chr6:143257200-143261600	Weak transcription	NHLF	lung
36	chr6:143257200-143263000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr6:143257200-143265000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:143257400-143261600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:143257600-143261600	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr6:143257600-143261600	Weak transcription	Left Ventricle	heart
41	chr6:143257600-143263400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:143257800-143264600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr6:143258000-143261600	Enhancers	Primary T cells from cord blood	blood
44	chr6:143258200-143263400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:143258600-143261200	Enhancers	Fetal Brain Male	brain
46	chr6:143258600-143261600	Weak transcription	Primary B cells from cord blood	blood
47	chr6:143259000-143262200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr6:143259000-143264200	Enhancers	Brain Hippocampus Middle	brain
49	chr6:143259400-143260600	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr6:143259400-143261000	Enhancers	Brain Angular Gyrus	brain

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