Variant report

Variant	rs62429306
Chromosome Location	chr6:134002457-134002458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62426200	0.83[AMR][1000 genomes]
rs62429303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62429309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133996400-134002800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:134000800-134005800	Enhancers	Fetal Lung	lung
3	chr6:134001600-134002600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:134002200-134002600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:134002200-134004600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:134002200-134005400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:134002400-134002600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr6:134002400-134002600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:134002400-134002800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr6:134002400-134003000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:134002400-134003200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:134002400-134003200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr6:134002400-134003400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:134002400-134003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:134002400-134004600	Enhancers	Fetal Kidney	kidney
16	chr6:134002400-134005000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr6:134002400-134005400	Enhancers	Fetal Stomach	stomach
18	chr6:134002400-134012800	Weak transcription	Ovary	ovary
19	chr6:134002400-134028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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