Variant report

Variant	rs62429309
Chromosome Location	chr6:134023191-134023192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134011892..134014081-chr6:134020457..134023191,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62426200	0.83[AMR][1000 genomes]
rs62429303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62429306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032687	chr6:133987372-134059728	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024201	chr6:133987372-134062162	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830812	chr6:133993897-134165407	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134002400-134028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:134020600-134028600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:134022000-134024400	Flanking Active TSS	K562	blood
4	chr6:134022400-134023400	Enhancers	HSMM	muscle
5	chr6:134022600-134023200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
6	chr6:134022600-134023200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:134022600-134023200	Enhancers	Fetal Stomach	stomach
8	chr6:134022600-134023200	Flanking Active TSS	HSMMtube	muscle
9	chr6:134022600-134023400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:134022600-134023600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:134022600-134024000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:134022800-134023200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:134022800-134023200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr6:134022800-134023200	Enhancers	Fetal Muscle Leg	muscle
15	chr6:134022800-134023200	Enhancers	Ovary	ovary
16	chr6:134022800-134023200	Enhancers	NHLF	lung
17	chr6:134022800-134023800	Enhancers	NHDF-Ad	bronchial
18	chr6:134022800-134024400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:134023000-134023200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:134023000-134023600	Enhancers	Osteobl	bone

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