Variant report

Variant	rs62435878
Chromosome Location	chr6:161796149-161796150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161152558..161154302-chr6:161794607..161797169,2	K562	blood:
2	chr6:161152558..161155557-chr6:161793126..161797169,4	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3924680	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4358593	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62435877	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62435879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62435880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62435882	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62435883	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62435886	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62435887	0.92[EUR][1000 genomes]
rs62435888	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62435889	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62435891	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62435893	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62435926	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62435934	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62435935	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62636151	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv869611	chr6:161690974-161817564	Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv1025168	chr6:161702621-161831885	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv886819	chr6:161712035-162520133	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv886820	chr6:161712880-162184932	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv830854	chr6:161739926-161927515	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv5577	chr6:161775026-161819733	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv518931	chr6:161793319-162406335	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161780600-161835800	Weak transcription	Right Atrium	heart
2	chr6:161792000-161796200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:161794200-161796200	Enhancers	Brain Substantia Nigra	brain
4	chr6:161794600-161796200	Enhancers	K562	blood
5	chr6:161794600-161797200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:161794800-161796200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:161794800-161796200	Enhancers	NHEK	skin
8	chr6:161794800-161796600	Enhancers	Fetal Brain Male	brain
9	chr6:161795000-161796200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:161795000-161796200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:161795000-161796200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:161795000-161796200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:161795000-161796200	Weak transcription	Brain Angular Gyrus	brain
14	chr6:161795000-161796200	Weak transcription	Brain Anterior Caudate	brain
15	chr6:161795000-161796200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:161795000-161796200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:161795000-161796400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:161795000-161796400	Weak transcription	HSMM	muscle
19	chr6:161795200-161796200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr6:161795200-161796200	Weak transcription	Brain Germinal Matrix	brain
21	chr6:161795200-161796200	Weak transcription	Fetal Muscle Leg	muscle
22	chr6:161795200-161796600	Enhancers	Colonic Mucosa	Colon
23	chr6:161795200-161796600	Enhancers	Esophagus	oesophagus
24	chr6:161795200-161797400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:161795200-161797600	Enhancers	Gastric	stomach
26	chr6:161795400-161796200	Weak transcription	Osteobl	bone
27	chr6:161795400-161796400	Weak transcription	Stomach Mucosa	stomach
28	chr6:161795600-161796200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:161795600-161796800	Weak transcription	Lung	lung
30	chr6:161795600-161797000	Enhancers	Pancreas	Pancrea
31	chr6:161795800-161796400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:161795800-161796400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:161795800-161797200	Enhancers	Placenta	Placenta
34	chr6:161795800-161802200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:161796000-161796200	Enhancers	Adipose Nuclei	Adipose
36	chr6:161796000-161796200	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr6:161796000-161796400	Enhancers	HMEC	breast
38	chr6:161796000-161796400	Enhancers	NH-A	brain
39	chr6:161796000-161797000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr6:161796000-161797200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:161796000-161797200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:161796000-161797400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:161796000-161797600	Enhancers	Spleen	Spleen

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