Variant report

Variant	rs62439510
Chromosome Location	chr6:87886912-87886913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:87880595..87882172-chr6:87885118..87887359,3	MCF-7	breast:
2	chr6:87884610..87889850-chr6:87890271..87893351,5	K562	blood:
3	chr6:87886069..87888632-chr6:87890271..87892855,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62439494	1.00[EUR][1000 genomes]
rs62439513	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv604114	chr6:87816905-87906053	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87866600-87889800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:87866600-87890000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:87866600-87890200	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:87867000-87895600	Weak transcription	HSMM	muscle
5	chr6:87867000-87915600	Weak transcription	NH-A	brain
6	chr6:87867200-87893400	Weak transcription	Adipose Nuclei	Adipose
7	chr6:87868000-87933000	Weak transcription	Hela-S3	cervix
8	chr6:87868200-87889600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:87868600-87889800	Weak transcription	Fetal Intestine Large	intestine
10	chr6:87871400-87890000	Weak transcription	Pancreas	Pancrea
11	chr6:87871400-87890200	Weak transcription	Gastric	stomach
12	chr6:87874200-87890000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:87874200-87892600	Weak transcription	NHDF-Ad	bronchial
14	chr6:87874400-87924200	Weak transcription	Fetal Kidney	kidney
15	chr6:87874600-87890000	Weak transcription	Psoas Muscle	Psoas
16	chr6:87875000-87910400	Weak transcription	K562	blood
17	chr6:87876400-87890200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:87876400-87890600	Weak transcription	NHLF	lung
19	chr6:87876600-87890000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:87879600-87889000	Weak transcription	Spleen	Spleen
21	chr6:87879800-87889000	Weak transcription	Fetal Stomach	stomach
22	chr6:87879800-87889800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:87879800-87889800	Weak transcription	Fetal Intestine Small	intestine
24	chr6:87879800-87890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:87879800-87890000	Weak transcription	Lung	lung
26	chr6:87879800-87923000	Weak transcription	Esophagus	oesophagus
27	chr6:87880200-87893000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:87880600-87906000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:87881200-87893400	Weak transcription	HepG2	liver
30	chr6:87881400-87926200	Weak transcription	Liver	Liver
31	chr6:87881600-87893000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:87881600-87893200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:87881800-87888200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr6:87881800-87889000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:87881800-87909400	Weak transcription	Fetal Brain Male	brain
36	chr6:87882000-87889600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr6:87882000-87899400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:87882200-87889800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr6:87882200-87889800	Weak transcription	Ovary	ovary
40	chr6:87882200-87890000	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr6:87882200-87896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:87882400-87889000	Weak transcription	Brain Germinal Matrix	brain
43	chr6:87882400-87889800	Weak transcription	Fetal Brain Female	brain
44	chr6:87883200-87890200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:87883400-87890200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:87883400-87926200	Weak transcription	Fetal Lung	lung
47	chr6:87883800-87889600	Weak transcription	Brain Hippocampus Middle	brain
48	chr6:87883800-87893000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr6:87883800-87897600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:87884000-87887400	Weak transcription	H1 Cell Line	embryonic stem cell

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