Variant report

Variant	rs62439513
Chromosome Location	chr6:87906111-87906112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs62439510	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv2758067	chr6:87817883-87992957	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2759453	chr6:87817883-87992957	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87867000-87915600	Weak transcription	NH-A	brain
2	chr6:87868000-87933000	Weak transcription	Hela-S3	cervix
3	chr6:87874400-87924200	Weak transcription	Fetal Kidney	kidney
4	chr6:87875000-87910400	Weak transcription	K562	blood
5	chr6:87879800-87923000	Weak transcription	Esophagus	oesophagus
6	chr6:87881400-87926200	Weak transcription	Liver	Liver
7	chr6:87881800-87909400	Weak transcription	Fetal Brain Male	brain
8	chr6:87883400-87926200	Weak transcription	Fetal Lung	lung
9	chr6:87884000-87964400	Weak transcription	NHEK	skin
10	chr6:87888200-87964200	Weak transcription	HSMMtube	muscle
11	chr6:87889800-87926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:87890200-87909400	Weak transcription	Brain Substantia Nigra	brain
13	chr6:87890800-87909600	Weak transcription	Brain Germinal Matrix	brain
14	chr6:87890800-87910000	Weak transcription	Right Ventricle	heart
15	chr6:87890800-87933000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:87891000-87920000	Weak transcription	Placenta	Placenta
17	chr6:87891000-87956000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:87891200-87913000	Weak transcription	Lung	lung
19	chr6:87891200-87929200	Weak transcription	Thymus	Thymus
20	chr6:87891400-87912800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:87891400-87932600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:87892000-87923000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:87892800-87921600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:87893000-87917600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr6:87893800-87915600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr6:87894000-87915600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:87894800-87921800	Weak transcription	NHDF-Ad	bronchial
28	chr6:87894800-87924200	Weak transcription	Adipose Nuclei	Adipose
29	chr6:87894800-87926200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:87895400-87906200	Weak transcription	NHLF	lung
31	chr6:87895800-87912600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr6:87895800-87924000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:87896000-87909600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:87896000-87932800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:87896200-87920200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:87896200-87921400	Weak transcription	HepG2	liver
37	chr6:87896400-87908400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:87896400-87910400	Weak transcription	Osteobl	bone
39	chr6:87896400-87911800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:87896400-87913000	Weak transcription	Fetal Intestine Large	intestine
41	chr6:87896400-87915600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr6:87896400-87925600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:87896400-87926000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:87896400-87927400	Weak transcription	HMEC	breast
45	chr6:87896400-87927800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:87896600-87909600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:87896600-87909600	Weak transcription	Psoas Muscle	Psoas
48	chr6:87896600-87909600	Weak transcription	Dnd41	blood
49	chr6:87896600-87910200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:87896600-87911400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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