Variant report

Variant	rs62440116
Chromosome Location	chr6:139762692-139762693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17406620	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17406820	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62440865	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62440866	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62440869	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139755400-139764600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:139755600-139763200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:139758200-139764200	Weak transcription	Fetal Kidney	kidney
4	chr6:139758400-139763400	Weak transcription	Placenta	Placenta
5	chr6:139758400-139764600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:139760800-139768200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:139761000-139764800	Weak transcription	Fetal Stomach	stomach
8	chr6:139761000-139766000	Weak transcription	Fetal Lung	lung
9	chr6:139761400-139763200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:139761800-139763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:139761800-139763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:139762000-139763000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:139762200-139763200	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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