Variant report

Variant	rs62440865
Chromosome Location	chr6:139765053-139765054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:139693530..139699538-chr6:139762864..139774913,28	K562	blood:
2	chr6:139754348..139756927-chr6:139762394..139767800,8	K562	blood:
3	chr6:139757906..139761736-chr6:139764964..139767365,3	MCF-7	breast:
4	chr6:139747942..139750604-chr6:139763994..139765795,2	K562	blood:
5	chr6:139693217..139702760-chr6:139758637..139773636,35	K562	blood:
6	chr6:139762168..139766688-chr6:139768523..139772512,5	K562	blood:
7	chr3:69374544..69375213-chr6:139764292..139765130,2	MCF-7	breast:
8	chr6:139755239..139757020-chr6:139764914..139766509,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17406620	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17406820	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62440116	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62440866	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62440869	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:139760800-139768200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:139761000-139766000	Weak transcription	Fetal Lung	lung
3	chr6:139763000-139765600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:139763000-139767600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:139763200-139765200	Flanking Active TSS	K562	blood
6	chr6:139763200-139765400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:139763400-139766200	Enhancers	Placenta	Placenta
8	chr6:139763800-139765600	Enhancers	NHDF-Ad	bronchial
9	chr6:139764000-139765200	Enhancers	NHLF	lung
10	chr6:139764000-139765400	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:139764000-139766800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr6:139764200-139765200	Enhancers	Fetal Kidney	kidney
13	chr6:139764200-139765200	Enhancers	NHEK	skin
14	chr6:139764600-139765200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:139764600-139765200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:139764600-139765200	Enhancers	HSMM	muscle
17	chr6:139764800-139765200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:139764800-139765200	Enhancers	HSMMtube	muscle
19	chr6:139764800-139765400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:139764800-139765400	Enhancers	Fetal Stomach	stomach
21	chr6:139764800-139768200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:139764800-139769000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:139764800-139769000	Weak transcription	NH-A	brain
24	chr6:139765000-139765200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:139765000-139765200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr6:139765000-139765800	Enhancers	Ovary	ovary
27	chr6:139765000-139766200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:139765000-139766200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:139765000-139766400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:139765000-139769000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links