Variant report

Variant	rs62440432
Chromosome Location	chr6:160877141-160877142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:160876814..160877519-chr6:161088556..161089198,2	MCF-7	breast:
2	chr6:160876378..160878345-chr6:160878761..160881634,2	K562	blood:
3	chr6:160876492..160879466-chr6:160895352..160897823,2	K562	blood:
4	chr6:160558114..160558643-chr6:160876721..160877596,2	MCF-7	breast:
5	chr6:160876699..160877379-chr6:160954968..160955609,2	K562	blood:
6	chr6:160559129..160560035-chr6:160876676..160877443,6	MCF-7	breast:
7	chr6:160876729..160877411-chr6:161088842..161089583,2	K562	blood:
8	chr6:160054179..160054998-chr6:160876576..160877179,2	K562	blood:
9	chr6:160509117..160510000-chr6:160876739..160877584,3	MCF-7	breast:
10	chr6:160559166..160560422-chr6:160876706..160877623,9	K562	blood:

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7744658	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv886809	chr6:160670494-160979275	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv886810	chr6:160700769-160897872	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv886811	chr6:160700769-161070990	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv886812	chr6:160706661-161024848	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv1020357	chr6:160849895-160883394	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	esv3356147	chr6:160875662-160879960	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160863600-160882800	Weak transcription	Gastric	stomach
2	chr6:160866600-160883800	Weak transcription	Spleen	Spleen
3	chr6:160867000-160877800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:160875400-160877200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:160875400-160877400	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr6:160876000-160877200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:160876000-160877200	Active TSS	NHDF-Ad	bronchial
8	chr6:160876000-160877600	Weak transcription	Liver	Liver
9	chr6:160876200-160877200	Active TSS	Fetal Kidney	kidney
10	chr6:160876200-160877400	Enhancers	Fetal Stomach	stomach
11	chr6:160876400-160877200	Flanking Active TSS	Stomach Smooth Muscle	stomach
12	chr6:160876400-160877600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr6:160876600-160877200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:160876600-160877200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:160876600-160877200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr6:160876600-160877200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:160876600-160877200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:160876600-160877200	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr6:160876600-160877200	Active TSS	Brain Substantia Nigra	brain
20	chr6:160876600-160877200	Flanking Active TSS	Colon Smooth Muscle	Colon
21	chr6:160876600-160877200	Flanking Active TSS	Fetal Muscle Leg	muscle
22	chr6:160876600-160877200	Active TSS	Rectal Smooth Muscle	rectum
23	chr6:160876600-160877200	Flanking Active TSS	Osteobl	bone
24	chr6:160876600-160877400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:160876600-160877400	Enhancers	Placenta	Placenta
26	chr6:160876600-160877400	Enhancers	Stomach Mucosa	stomach
27	chr6:160876600-160877800	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr6:160876600-160882600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr6:160876600-160882600	Enhancers	Dnd41	blood
30	chr6:160876600-160882800	Enhancers	Primary T cells fromperipheralblood	blood
31	chr6:160876600-160882800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr6:160876600-160883000	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr6:160876800-160877200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:160876800-160877200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:160876800-160877200	Flanking Active TSS	Adipose Nuclei	Adipose
36	chr6:160876800-160877200	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr6:160876800-160877200	Enhancers	Brain Germinal Matrix	brain
38	chr6:160876800-160877200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
39	chr6:160876800-160877200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:160876800-160877200	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr6:160876800-160877200	Enhancers	Fetal Brain Female	brain
42	chr6:160876800-160877200	Flanking Active TSS	Ovary	ovary
43	chr6:160876800-160877200	Enhancers	Placenta Amnion	Placenta Amnion
44	chr6:160876800-160877200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
45	chr6:160876800-160877200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr6:160876800-160877200	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:160876800-160877200	Flanking Active TSS	A549	lung
48	chr6:160876800-160877200	Enhancers	HepG2	liver
49	chr6:160876800-160877200	Active TSS	NH-A	brain
50	chr6:160876800-160877200	Flanking Active TSS	NHEK	skin

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