Variant report

Variant	rs7744658
Chromosome Location	chr6:160876356-160876357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1112073	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs1397168	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs2255830	1.00[CHB][hapmap]
rs2504922	1.00[CHB][hapmap]
rs28399108	0.87[EUR][1000 genomes]
rs3123629	1.00[CHB][hapmap];0.86[GIH][hapmap];0.81[ASN][1000 genomes]
rs3123631	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs3124784	0.81[ASN][1000 genomes]
rs3124785	0.81[ASN][1000 genomes]
rs3127568	0.81[ASN][1000 genomes]
rs3127569	1.00[CHB][hapmap];0.86[GIH][hapmap];0.81[ASN][1000 genomes]
rs3127596	0.81[ASN][1000 genomes]
rs3127599	1.00[CHB][hapmap];0.86[GIH][hapmap];0.81[ASN][1000 genomes]
rs3127602	1.00[CHB][hapmap];0.80[GIH][hapmap];0.81[ASN][1000 genomes]
rs4129086	1.00[CHB][hapmap]
rs4709432	0.93[CEU][hapmap];0.93[GIH][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes]
rs58432601	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62440432	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs62441868	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62441870	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62441872	0.81[ASN][1000 genomes]
rs6916433	0.81[CEU][hapmap];0.89[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7761293	1.00[CHB][hapmap]
rs9347407	1.00[CHB][hapmap]
rs9347408	1.00[CHB][hapmap]
rs9355805	1.00[CHB][hapmap]
rs9365166	1.00[CHB][hapmap]
rs9456537	1.00[CEU][hapmap];0.93[GIH][hapmap];0.87[EUR][1000 genomes]
rs9456538	0.93[CEU][hapmap];0.89[GIH][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs9457930	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv886809	chr6:160670494-160979275	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv886810	chr6:160700769-160897872	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv886811	chr6:160700769-161070990	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv886812	chr6:160706661-161024848	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	nsv1020357	chr6:160849895-160883394	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	esv3356147	chr6:160875662-160879960	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160818600-160876800	Weak transcription	Esophagus	oesophagus
2	chr6:160852600-160876800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:160863600-160882800	Weak transcription	Gastric	stomach
4	chr6:160864400-160876600	Weak transcription	Brain Substantia Nigra	brain
5	chr6:160866600-160876600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:160866600-160883800	Weak transcription	Spleen	Spleen
7	chr6:160867000-160877800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:160867200-160876800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:160867400-160876800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:160868800-160876600	Weak transcription	Placenta	Placenta
11	chr6:160870400-160876800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:160873400-160876400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:160875200-160876400	Weak transcription	Aorta	Aorta
14	chr6:160875200-160876400	Enhancers	Ovary	ovary
15	chr6:160875200-160876600	Enhancers	Fetal Muscle Leg	muscle
16	chr6:160875200-160876800	Weak transcription	Fetal Brain Male	brain
17	chr6:160875400-160877200	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr6:160875400-160877400	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr6:160875600-160876600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:160875600-160876600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:160875600-160876800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:160875800-160876800	Weak transcription	Fetal Intestine Large	intestine
23	chr6:160875800-160876800	Enhancers	A549	lung
24	chr6:160875800-160876800	Weak transcription	HepG2	liver
25	chr6:160876000-160876600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:160876000-160876600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:160876000-160876600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr6:160876000-160876600	Enhancers	Colon Smooth Muscle	Colon
29	chr6:160876000-160876600	Enhancers	Fetal Muscle Trunk	muscle
30	chr6:160876000-160876800	Enhancers	Adipose Nuclei	Adipose
31	chr6:160876000-160876800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:160876000-160877200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:160876000-160877200	Active TSS	NHDF-Ad	bronchial
34	chr6:160876000-160877600	Weak transcription	Liver	Liver
35	chr6:160876200-160876400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:160876200-160876400	Active TSS	Stomach Smooth Muscle	stomach
37	chr6:160876200-160876400	Bivalent Enhancer	HSMMtube	muscle
38	chr6:160876200-160876600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:160876200-160876600	Enhancers	Fetal Lung	lung
40	chr6:160876200-160876600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:160876200-160876600	Enhancers	Osteobl	bone
42	chr6:160876200-160877200	Active TSS	Fetal Kidney	kidney
43	chr6:160876200-160877400	Enhancers	Fetal Stomach	stomach

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