Variant report

Variant	rs62440609
Chromosome Location	chr6:74123098-74123099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000203907	Chromatin interaction
ENSG00000235174	Chromatin interaction
ENSG00000203908	Chromatin interaction
ENSG00000231332	Chromatin interaction
ENSG00000203909	Chromatin interaction
ENSG00000164430	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10943093	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11753584	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11756483	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3757106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62440588	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6917933	0.86[AFR][1000 genomes]
rs6927623	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442907	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446894	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9446899	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv518515	chr6:74122155-74126084	Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74115000-74131000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:74115800-74131200	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr6:74117800-74131800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:74118600-74125600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:74119200-74149000	Weak transcription	Fetal Intestine Large	intestine
6	chr6:74120400-74126000	Weak transcription	Placenta	Placenta
7	chr6:74120600-74131200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:74121800-74125200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:74121800-74127800	Weak transcription	K562	blood
10	chr6:74122200-74131200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:74122400-74131200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:74122800-74131400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:74123000-74124600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:74123000-74130200	Strong transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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