Variant report

Variant	rs9446894
Chromosome Location	chr6:74100462-74100463
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000234882	Chromatin interaction
ENSG00000203907	Chromatin interaction
ENSG00000156508	Chromatin interaction
ENSG00000234025	Chromatin interaction
ENSG00000135297	Chromatin interaction
ENSG00000238464	Chromatin interaction
ENSG00000080007	Chromatin interaction
ENSG00000207023	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10943093	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11753584	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11756483	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3757106	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62440588	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62440609	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6927623	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6934445	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9442907	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9446899	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74099200-74104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:74099200-74104400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:74099200-74104400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:74099200-74104400	Weak transcription	Thymus	Thymus
5	chr6:74099200-74110200	Weak transcription	Right Atrium	heart
6	chr6:74099400-74101200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:74099400-74101200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:74099400-74102000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:74099400-74103400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:74099400-74104600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:74099800-74101000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:74099800-74104600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:74100000-74100600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:74100000-74101000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:74100000-74101000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:74100400-74100800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:74100400-74100800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr6:74100400-74100800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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