Variant report

Variant	rs62442061
Chromosome Location	chr6:165540109-165540110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13437162	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17576488	0.90[AMR][1000 genomes]
rs1837866	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28854576	0.96[EUR][1000 genomes]
rs62442077	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62442109	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62444024	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62444037	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62444039	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9457038	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9457039	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9459297	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9459301	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9459302	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165539200-165540200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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