Variant report

Variant	rs9457038
Chromosome Location	chr6:165520199-165520200
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13437162	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1837866	0.86[EUR][1000 genomes]
rs28854576	0.90[EUR][1000 genomes]
rs62442061	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62442077	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62442109	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62444024	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62444037	0.93[EUR][1000 genomes]
rs62444039	0.93[EUR][1000 genomes]
rs9457039	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9459297	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9459301	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165515200-165520600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:165516400-165530800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:165519200-165520200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:165519400-165520800	Enhancers	Osteobl	bone
5	chr6:165519800-165521200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:165520000-165520600	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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