Variant report

Variant	rs62443551
Chromosome Location	chr7:14611741-14611742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs62443468	1.00[AMR][1000 genomes]
rs62443474	1.00[AMR][1000 genomes]
rs62443475	1.00[AMR][1000 genomes]
rs62443478	1.00[AMR][1000 genomes]
rs62443480	1.00[AMR][1000 genomes]
rs62443481	1.00[AMR][1000 genomes]
rs62443482	1.00[AMR][1000 genomes]
rs62443483	1.00[AMR][1000 genomes]
rs62443485	1.00[AMR][1000 genomes]
rs62443493	1.00[AMR][1000 genomes]
rs62443494	1.00[AMR][1000 genomes]
rs62443526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62443527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62443552	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887710	chr7:14587948-14653702	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv606284	chr7:14594236-14619026	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62443551	RQCD1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14603800-14624200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:14604200-14624000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:14610000-14621200	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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