Variant report
| Variant | rs62443494 |
|---|---|
| Chromosome Location | chr7:14549102-14549103 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs28574740 | 1.00[EUR][1000 genomes] |
| rs58696251 | 0.87[EUR][1000 genomes] |
| rs62443274 | 1.00[EUR][1000 genomes] |
| rs62443276 | 1.00[EUR][1000 genomes] |
| rs62443277 | 1.00[EUR][1000 genomes] |
| rs62443279 | 1.00[EUR][1000 genomes] |
| rs62443280 | 1.00[EUR][1000 genomes] |
| rs62443468 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443474 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443475 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443478 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443480 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443481 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443482 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443483 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443484 | 1.00[EUR][1000 genomes] |
| rs62443485 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443493 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62443526 | 1.00[AMR][1000 genomes] |
| rs62443527 | 1.00[AMR][1000 genomes] |
| rs62443551 | 1.00[AMR][1000 genomes] |
| rs62443552 | 1.00[AMR][1000 genomes] |
| rs62444647 | 0.87[EUR][1000 genomes] |
| rs62444648 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848567 | chr7:14464118-14579801 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887707 | chr7:14471682-14576163 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv887708 | chr7:14494508-14617982 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv1800100 | chr7:14511454-14564068 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv606282 | chr7:14542836-14579801 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs62443494 | RQCD1 | trans | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14548000-14551400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr7:14548400-14549200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
