Variant report

Variant	rs58696251
Chromosome Location	chr7:14439895-14439896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs28574740	0.87[EUR][1000 genomes]
rs62443274	0.87[EUR][1000 genomes]
rs62443276	0.87[EUR][1000 genomes]
rs62443277	0.87[EUR][1000 genomes]
rs62443279	0.87[EUR][1000 genomes]
rs62443280	0.87[EUR][1000 genomes]
rs62443468	0.87[EUR][1000 genomes]
rs62443474	0.87[EUR][1000 genomes]
rs62443475	0.87[EUR][1000 genomes]
rs62443478	0.87[EUR][1000 genomes]
rs62443480	0.87[EUR][1000 genomes]
rs62443481	0.87[EUR][1000 genomes]
rs62443482	0.87[EUR][1000 genomes]
rs62443483	0.87[EUR][1000 genomes]
rs62443484	0.87[EUR][1000 genomes]
rs62443485	0.87[EUR][1000 genomes]
rs62443493	0.87[EUR][1000 genomes]
rs62443494	0.87[EUR][1000 genomes]
rs62444601	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62444603	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62444604	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62444606	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14439800-14440400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:14439800-14440400	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links