Variant report

Variant	rs28574740
Chromosome Location	chr7:14526757-14526758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10232365	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10232484	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10232606	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10242414	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10255269	1.00[ASN][1000 genomes]
rs10258060	1.00[ASN][1000 genomes]
rs28688847	1.00[ASN][1000 genomes]
rs3801364	1.00[ASN][1000 genomes]
rs58696251	0.87[EUR][1000 genomes]
rs62443274	1.00[EUR][1000 genomes]
rs62443276	1.00[EUR][1000 genomes]
rs62443277	1.00[EUR][1000 genomes]
rs62443279	1.00[EUR][1000 genomes]
rs62443280	1.00[EUR][1000 genomes]
rs62443468	1.00[EUR][1000 genomes]
rs62443474	1.00[EUR][1000 genomes]
rs62443475	1.00[EUR][1000 genomes]
rs62443478	1.00[EUR][1000 genomes]
rs62443480	1.00[EUR][1000 genomes]
rs62443481	1.00[EUR][1000 genomes]
rs62443482	1.00[EUR][1000 genomes]
rs62443483	1.00[EUR][1000 genomes]
rs62443484	1.00[EUR][1000 genomes]
rs62443485	1.00[EUR][1000 genomes]
rs62443493	1.00[EUR][1000 genomes]
rs62443494	1.00[EUR][1000 genomes]
rs62444647	0.87[EUR][1000 genomes]
rs62444648	0.87[EUR][1000 genomes]
rs73280910	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14520200-14527600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:14520400-14542400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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