Variant report
| Variant | rs62444986 |
|---|---|
| Chromosome Location | chr6:86448545-86448546 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:86447904..86450443-chr6:86452710..86454543,2 | MCF-7 | breast: | |
| 2 | chr6:86386878..86389803-chr6:86445514..86448985,3 | K562 | blood: | |
| 3 | chr6:86387077..86390204-chr6:86446127..86450544,5 | K562 | blood: | |
| 4 | chr6:86382878..86385550-chr6:86447339..86449305,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000203875 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs62443330 | 1.00[ASN][1000 genomes] |
| rs62443332 | 1.00[ASN][1000 genomes] |
| rs62443351 | 1.00[ASN][1000 genomes] |
| rs62443354 | 1.00[ASN][1000 genomes] |
| rs62443355 | 1.00[ASN][1000 genomes] |
| rs62443357 | 1.00[ASN][1000 genomes] |
| rs62443358 | 1.00[ASN][1000 genomes] |
| rs62444966 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62444988 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62445020 | 1.00[ASN][1000 genomes] |
| rs62445023 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62445029 | 1.00[ASN][1000 genomes] |
| rs7753157 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028293 | chr6:86353958-86778912 | Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
| 2 | nsv538350 | chr6:86353958-86778912 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
| 3 | nsv886335 | chr6:86445651-86669361 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
