Variant report

Variant	rs62444988
Chromosome Location	chr6:86460586-86460587
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs62443332	1.00[ASN][1000 genomes]
rs62443351	1.00[ASN][1000 genomes]
rs62443354	1.00[ASN][1000 genomes]
rs62443355	1.00[ASN][1000 genomes]
rs62443357	1.00[ASN][1000 genomes]
rs62443358	1.00[ASN][1000 genomes]
rs62444966	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62444986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62445020	1.00[ASN][1000 genomes]
rs62445023	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62445029	1.00[ASN][1000 genomes]
rs7753157	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028293	chr6:86353958-86778912	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
2	nsv538350	chr6:86353958-86778912	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
3	nsv886335	chr6:86445651-86669361	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86455600-86460800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:86459200-86461200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:86459200-86461800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:86459400-86460600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:86459400-86460600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:86460000-86461800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:86460000-86463200	Enhancers	Fetal Intestine Large	intestine
8	chr6:86460200-86460800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:86460400-86461000	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links