Variant report

Variant	rs62453446
Chromosome Location	chr7:39299749-39299750
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10224140	1.00[ASN][1000 genomes]
rs10279204	1.00[ASN][1000 genomes]
rs11773042	1.00[ASN][1000 genomes]
rs13241248	1.00[ASN][1000 genomes]
rs4317479	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1015572	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv538821	chr7:39185895-39413053	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv887969	chr7:39265429-39391875	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3344888	chr7:39297727-39301825	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3395780	chr7:39298327-39301725	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3336748	chr7:39298327-39302025	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39293000-39299800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:39293800-39310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:39298000-39299800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:39299000-39299800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:39299200-39304600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:39299200-39304600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:39299400-39299800	Enhancers	Spleen	Spleen
8	chr7:39299400-39301000	Enhancers	Gastric	stomach
9	chr7:39299600-39299800	Bivalent/Poised TSS	Fetal Lung	lung
10	chr7:39299600-39300400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
11	chr7:39299600-39300600	ZNF genes & repeats	Fetal Kidney	kidney
12	chr7:39299600-39300800	ZNF genes & repeats	Pancreas	Pancrea
13	chr7:39299600-39304800	Weak transcription	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links