Variant report

Variant	rs62454894
Chromosome Location	chr7:68929163-68929164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10241446	0.96[EUR][1000 genomes]
rs10256311	0.94[EUR][1000 genomes]
rs10261510	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12334231	0.90[EUR][1000 genomes]
rs12334234	0.90[EUR][1000 genomes]
rs28524600	0.96[EUR][1000 genomes]
rs55693719	0.86[EUR][1000 genomes]
rs55901635	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59342262	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59517352	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62454937	0.88[EUR][1000 genomes]
rs62454938	0.86[EUR][1000 genomes]
rs73155227	0.96[EUR][1000 genomes]
rs7357113	0.94[EUR][1000 genomes]
rs7787342	0.90[EUR][1000 genomes]
rs7787695	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:68923400-68934400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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