Variant report

Variant	rs7787342
Chromosome Location	chr7:69015270-69015271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10233869	0.81[ASN][1000 genomes]
rs10236103	0.90[ASN][1000 genomes]
rs10238307	0.90[ASN][1000 genomes]
rs10241446	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10245493	1.00[ASN][1000 genomes]
rs10255613	1.00[ASN][1000 genomes]
rs10256309	0.95[ASN][1000 genomes]
rs10256311	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256943	0.90[ASN][1000 genomes]
rs10257587	0.81[ASN][1000 genomes]
rs10261380	0.90[ASN][1000 genomes]
rs10261510	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10268221	0.95[ASN][1000 genomes]
rs10268457	0.95[ASN][1000 genomes]
rs10276664	0.98[ASN][1000 genomes]
rs10280018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10281575	0.95[ASN][1000 genomes]
rs10281579	0.95[ASN][1000 genomes]
rs11764277	0.81[ASN][1000 genomes]
rs11773581	0.95[ASN][1000 genomes]
rs12334231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12334234	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17140693	1.00[ASN][1000 genomes]
rs17140755	0.86[ASN][1000 genomes]
rs17140759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17140783	0.81[ASN][1000 genomes]
rs28493290	0.81[ASN][1000 genomes]
rs28524600	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577243	0.81[ASN][1000 genomes]
rs3735260	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[ASN][1000 genomes]
rs4305786	0.81[ASN][1000 genomes]
rs55654955	0.81[ASN][1000 genomes]
rs55693719	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55847506	1.00[ASN][1000 genomes]
rs55880824	0.81[ASN][1000 genomes]
rs55901635	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56800568	0.90[ASN][1000 genomes]
rs59342262	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59517352	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61424317	0.81[ASN][1000 genomes]
rs61692535	1.00[ASN][1000 genomes]
rs61744589	0.98[ASN][1000 genomes]
rs62454894	0.90[EUR][1000 genomes]
rs62454937	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454938	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950638	0.90[ASN][1000 genomes]
rs6951770	0.90[ASN][1000 genomes]
rs6977472	0.90[ASN][1000 genomes]
rs717266	0.90[ASN][1000 genomes]
rs73155227	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164795	0.81[ASN][1000 genomes]
rs73167506	0.90[ASN][1000 genomes]
rs7357113	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787695	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7810982	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69014800-69017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:69015000-69015400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:69015000-69015400	Enhancers	Brain Angular Gyrus	brain
4	chr7:69015000-69015400	Enhancers	Brain Anterior Caudate	brain
5	chr7:69015000-69015400	Enhancers	Brain Hippocampus Middle	brain
6	chr7:69015000-69015400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:69015000-69015400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:69015000-69015400	Bivalent Enhancer	Fetal Heart	heart
9	chr7:69015200-69015400	Enhancers	Stomach Smooth Muscle	stomach
10	chr7:69015200-69016200	Weak transcription	Pancreas	Pancrea

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