Variant report

Variant	rs56800568
Chromosome Location	chr7:69073387-69073388
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 143 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs1000874	0.90[EUR][1000 genomes]
rs10085600	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10216097	0.87[EUR][1000 genomes]
rs10229578	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10229588	0.94[EUR][1000 genomes]
rs10230356	0.94[EUR][1000 genomes]
rs10230750	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10233869	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10234831	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10236103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238307	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10239569	0.87[EUR][1000 genomes]
rs10240462	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10241446	0.86[ASN][1000 genomes]
rs10242206	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10243408	0.90[EUR][1000 genomes]
rs10244001	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10244128	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10244247	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10244885	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10245493	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10245690	0.87[EUR][1000 genomes]
rs10247386	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10248237	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10254086	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10255563	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10255613	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10256309	0.85[ASN][1000 genomes]
rs10256311	0.90[ASN][1000 genomes]
rs10256512	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10256943	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10257587	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10261380	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261510	0.82[ASN][1000 genomes]
rs10263467	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10268221	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10268457	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10268729	0.94[EUR][1000 genomes]
rs10269267	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10272781	0.87[EUR][1000 genomes]
rs10274099	0.94[EUR][1000 genomes]
rs10274419	0.87[EUR][1000 genomes]
rs10275112	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10275721	0.87[EUR][1000 genomes]
rs10276664	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10278978	0.87[EUR][1000 genomes]
rs10279669	0.87[EUR][1000 genomes]
rs10279708	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10280018	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10281575	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10281579	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10452705	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10487943	0.87[EUR][1000 genomes]
rs11762049	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11764277	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11764717	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11769033	0.90[EUR][1000 genomes]
rs11769738	0.94[EUR][1000 genomes]
rs11771751	0.90[EUR][1000 genomes]
rs11771899	0.87[EUR][1000 genomes]
rs11772602	0.94[EUR][1000 genomes]
rs11773581	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11975481	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11975506	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11979745	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12334231	0.81[ASN][1000 genomes]
rs12334234	0.85[ASN][1000 genomes]
rs17140693	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17140755	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17140759	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17140783	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17140817	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17140884	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17140938	0.87[EUR][1000 genomes]
rs17353920	0.84[EUR][1000 genomes]
rs17457910	0.84[EUR][1000 genomes]
rs17458713	0.84[EUR][1000 genomes]
rs2052124	0.84[EUR][1000 genomes]
rs2068718	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28493290	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28524600	0.90[ASN][1000 genomes]
rs28577243	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2865804	0.90[EUR][1000 genomes]
rs28812289	0.87[EUR][1000 genomes]
rs3735260	0.95[ASN][1000 genomes]
rs3800979	0.90[EUR][1000 genomes]
rs41379648	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4305786	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55654955	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55693719	0.90[ASN][1000 genomes]
rs55756263	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55847506	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55880824	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55901635	0.82[ASN][1000 genomes]
rs57493471	0.94[EUR][1000 genomes]
rs58626042	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58633452	0.83[AFR][1000 genomes]
rs58666988	0.90[EUR][1000 genomes]
rs58863846	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59342262	0.82[ASN][1000 genomes]
rs59517352	0.82[ASN][1000 genomes]
rs61424317	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61692535	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61744589	0.93[ASN][1000 genomes]
rs62454937	0.90[ASN][1000 genomes]
rs62454938	0.90[ASN][1000 genomes]
rs6460525	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6945524	0.84[EUR][1000 genomes]
rs6950638	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6951770	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958450	0.90[EUR][1000 genomes]
rs6962237	0.87[EUR][1000 genomes]
rs6962338	0.84[EUR][1000 genomes]
rs6967788	0.87[EUR][1000 genomes]
rs6975211	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6977472	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717266	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154605	0.87[EUR][1000 genomes]
rs73155227	0.90[ASN][1000 genomes]
rs73164795	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73166559	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73167506	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73168739	0.90[EUR][1000 genomes]
rs73170834	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73170852	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73170857	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73170864	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73172903	0.81[EUR][1000 genomes]
rs7357113	0.90[ASN][1000 genomes]
rs740946	0.90[EUR][1000 genomes]
rs7777269	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7777621	0.90[EUR][1000 genomes]
rs7780835	0.87[EUR][1000 genomes]
rs7784950	0.87[EUR][1000 genomes]
rs7787342	0.90[ASN][1000 genomes]
rs7787695	0.82[ASN][1000 genomes]
rs7801209	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7810982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs917725	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69066600-69079600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:69066800-69084600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:69068200-69074800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:69068800-69073600	Weak transcription	Fetal Kidney	kidney
5	chr7:69069200-69074800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:69069200-69075600	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:69069600-69075000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:69069800-69074800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:69069800-69075200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:69070200-69077600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:69070600-69074000	Weak transcription	Fetal Stomach	stomach
12	chr7:69070600-69074000	Weak transcription	Ovary	ovary
13	chr7:69070600-69075000	Weak transcription	Adipose Nuclei	Adipose
14	chr7:69070600-69075000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr7:69070600-69077800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:69070800-69074800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:69070800-69074800	Weak transcription	Brain Anterior Caudate	brain
18	chr7:69071000-69078000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:69071200-69074000	Weak transcription	Fetal Lung	lung
20	chr7:69071200-69074400	Weak transcription	Fetal Brain Female	brain
21	chr7:69071400-69074000	Weak transcription	Brain Germinal Matrix	brain
22	chr7:69071400-69075000	Weak transcription	GM12878-XiMat	blood
23	chr7:69072000-69075000	Weak transcription	Fetal Brain Male	brain
24	chr7:69072000-69077600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:69072600-69076400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:69072800-69074000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:69072800-69075200	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr7:69073000-69073400	Enhancers	Fetal Muscle Leg	muscle
29	chr7:69073000-69074600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:69073200-69073800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:69073200-69074000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
32	chr7:69073200-69075600	Weak transcription	Psoas Muscle	Psoas

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