Variant report

Variant	rs10234831
Chromosome Location	chr7:69196931-69196932
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs1000873	0.82[EUR][1000 genomes]
rs1000874	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10085600	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10215914	0.82[EUR][1000 genomes]
rs10216097	0.86[EUR][1000 genomes]
rs10229578	0.83[EUR][1000 genomes]
rs10229588	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10230356	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10230750	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10233869	0.83[EUR][1000 genomes]
rs10236103	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10238307	0.83[EUR][1000 genomes]
rs10239569	0.86[EUR][1000 genomes]
rs10240462	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10242206	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10243408	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10244001	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10244128	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10244247	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10244885	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10245493	0.96[AMR][1000 genomes]
rs10245690	0.86[EUR][1000 genomes]
rs10247386	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10248237	0.83[EUR][1000 genomes]
rs10254086	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10255563	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10255613	0.96[AMR][1000 genomes]
rs10256512	0.83[EUR][1000 genomes]
rs10256943	0.83[EUR][1000 genomes]
rs10257587	0.83[EUR][1000 genomes]
rs10261380	0.83[EUR][1000 genomes]
rs10263467	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10268221	0.96[AMR][1000 genomes]
rs10268457	0.96[AMR][1000 genomes]
rs10268729	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10269267	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10272781	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10274099	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10274419	0.86[EUR][1000 genomes]
rs10275112	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10275721	0.86[EUR][1000 genomes]
rs10276664	0.87[AMR][1000 genomes]
rs10278978	0.86[EUR][1000 genomes]
rs10279669	0.86[EUR][1000 genomes]
rs10279708	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10280018	0.87[AMR][1000 genomes]
rs10281575	0.96[AMR][1000 genomes]
rs10281579	0.96[AMR][1000 genomes]
rs10452705	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10487943	0.86[EUR][1000 genomes]
rs10950193	0.82[EUR][1000 genomes]
rs11762049	0.83[EUR][1000 genomes]
rs11763426	0.82[EUR][1000 genomes]
rs11764277	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11764717	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11769033	0.83[EUR][1000 genomes]
rs11769738	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11770241	0.82[EUR][1000 genomes]
rs11771751	0.83[EUR][1000 genomes]
rs11771899	0.86[EUR][1000 genomes]
rs11772602	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11773581	0.96[AMR][1000 genomes]
rs11975481	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11975506	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11979745	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17140693	0.96[AMR][1000 genomes]
rs17140755	0.83[EUR][1000 genomes]
rs17140759	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17140783	0.83[EUR][1000 genomes]
rs17140817	0.83[EUR][1000 genomes]
rs17140884	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17140938	0.86[EUR][1000 genomes]
rs17350805	0.83[EUR][1000 genomes]
rs17353920	0.96[EUR][1000 genomes]
rs17361825	0.83[EUR][1000 genomes]
rs17457910	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17458187	0.82[EUR][1000 genomes]
rs17458713	0.96[EUR][1000 genomes]
rs2052124	0.96[EUR][1000 genomes]
rs2068718	0.83[EUR][1000 genomes]
rs28493290	0.83[EUR][1000 genomes]
rs28577243	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2865804	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28812289	0.86[EUR][1000 genomes]
rs34080361	0.90[EUR][1000 genomes]
rs3800979	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41379648	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4305786	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55654955	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55756263	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55847506	0.92[AMR][1000 genomes]
rs55880824	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56405888	0.82[EUR][1000 genomes]
rs56800568	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57493471	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58626042	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58666988	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58863846	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61424317	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61692535	0.96[AMR][1000 genomes]
rs6460525	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6945524	0.96[EUR][1000 genomes]
rs6947326	0.84[EUR][1000 genomes]
rs6950638	0.83[EUR][1000 genomes]
rs6951770	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6958450	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6962338	0.96[EUR][1000 genomes]
rs6967788	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6975211	0.84[AMR][1000 genomes]
rs6977472	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6980305	0.80[AMR][1000 genomes]
rs717266	0.83[EUR][1000 genomes]
rs719294	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73154605	0.86[EUR][1000 genomes]
rs73164783	0.82[EUR][1000 genomes]
rs73164795	0.83[EUR][1000 genomes]
rs73166559	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73167506	0.83[EUR][1000 genomes]
rs73168739	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73168740	0.86[EUR][1000 genomes]
rs73168761	0.82[EUR][1000 genomes]
rs73170834	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73170852	0.83[EUR][1000 genomes]
rs73170857	0.83[EUR][1000 genomes]
rs73170864	0.83[EUR][1000 genomes]
rs73172903	0.81[EUR][1000 genomes]
rs740946	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7777269	0.83[EUR][1000 genomes]
rs7777621	0.90[EUR][1000 genomes]
rs7780835	0.86[EUR][1000 genomes]
rs7784950	0.86[EUR][1000 genomes]
rs7801209	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7810982	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs917718	0.84[EUR][1000 genomes]
rs917725	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3394718	chr7:69194534-69238432	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69185000-69203000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:69193400-69197000	Weak transcription	Ovary	ovary
3	chr7:69193400-69197000	Weak transcription	Psoas Muscle	Psoas
4	chr7:69193400-69202400	Weak transcription	Fetal Muscle Leg	muscle
5	chr7:69193400-69204200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:69193600-69197000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:69193800-69203800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:69194000-69197000	Weak transcription	NH-A	brain
9	chr7:69195600-69197000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:69195600-69198200	Enhancers	Stomach Mucosa	stomach
11	chr7:69195800-69198000	Enhancers	A549	lung
12	chr7:69196000-69198800	Enhancers	Brain Germinal Matrix	brain
13	chr7:69196000-69203000	Weak transcription	Fetal Lung	lung
14	chr7:69196400-69198400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:69196400-69198400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:69196600-69197400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:69196600-69197600	Enhancers	Colon Smooth Muscle	Colon
18	chr7:69196600-69198000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:69196600-69198000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:69196600-69198000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:69196600-69198200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:69196600-69198400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr7:69196600-69198600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr7:69196600-69198600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr7:69196600-69198600	Enhancers	H9 Cell Line	embryonic stem cell
26	chr7:69196600-69198600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:69196600-69199000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr7:69196800-69197400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:69196800-69197600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr7:69196800-69198000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr7:69196800-69198400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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