Variant report

Variant	rs17140759
Chromosome Location	chr7:69120233-69120234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69112200..69113806-chr7:69119415..69121887,2	MCF-7	breast:
2	chr1:2515862..2518355-chr7:69118525..69120604,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157870	Chromatin interaction

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs1000874	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10085600	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10216097	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10229336	0.87[EUR][1000 genomes]
rs10229578	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10229588	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10230356	0.97[EUR][1000 genomes]
rs10230750	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10233869	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10234831	0.83[EUR][1000 genomes]
rs10236103	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10238307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10239569	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10240462	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10241446	0.82[ASN][1000 genomes]
rs10242206	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10243408	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10244001	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10244128	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10244247	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10244885	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10245493	0.86[ASN][1000 genomes]
rs10245690	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10247386	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10248237	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10254086	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10255563	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10255613	0.86[ASN][1000 genomes]
rs10256309	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10256311	0.86[ASN][1000 genomes]
rs10256512	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10256943	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10257587	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10261380	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10263467	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10268221	0.81[ASN][1000 genomes]
rs10268457	0.81[ASN][1000 genomes]
rs10268729	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10269267	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10272781	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10274099	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10274419	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10275112	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10275721	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10276664	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10278978	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10279669	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10279708	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10280018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10281575	0.81[ASN][1000 genomes]
rs10281579	0.81[ASN][1000 genomes]
rs10452705	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10487943	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10950193	0.85[EUR][1000 genomes]
rs11762049	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11764277	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11764717	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11769033	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11769738	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11770241	0.85[EUR][1000 genomes]
rs11771751	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11771899	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11772602	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11773581	0.81[ASN][1000 genomes]
rs11975481	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11975506	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11979745	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12334234	0.81[ASN][1000 genomes]
rs17140693	0.86[ASN][1000 genomes]
rs17140755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140783	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17140817	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17140884	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17140938	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17350805	0.80[EUR][1000 genomes]
rs17353920	0.87[EUR][1000 genomes]
rs17457910	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17458713	0.87[EUR][1000 genomes]
rs2052124	0.87[EUR][1000 genomes]
rs2068718	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28493290	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28524600	0.86[ASN][1000 genomes]
rs28577243	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2865804	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28812289	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34080361	0.93[EUR][1000 genomes]
rs3735260	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3800979	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41379648	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4305786	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55654955	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55693719	0.86[ASN][1000 genomes]
rs55756263	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55847506	0.86[ASN][1000 genomes]
rs55880824	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56800568	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57493471	0.97[EUR][1000 genomes]
rs58626042	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58666988	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58863846	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61370051	0.85[EUR][1000 genomes]
rs61424317	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61692535	0.86[ASN][1000 genomes]
rs61744589	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62454937	0.86[ASN][1000 genomes]
rs62454938	0.86[ASN][1000 genomes]
rs6460525	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6945524	0.87[EUR][1000 genomes]
rs6947326	0.87[EUR][1000 genomes]
rs6950638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6951770	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6958450	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6962237	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6962338	0.87[EUR][1000 genomes]
rs6967788	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6975211	0.87[EUR][1000 genomes]
rs6977472	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6980305	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs717266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs719294	0.93[EUR][1000 genomes]
rs73154605	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73155227	0.86[ASN][1000 genomes]
rs73164795	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73166559	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73167506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73168739	0.93[EUR][1000 genomes]
rs73168740	0.97[EUR][1000 genomes]
rs73168747	0.87[EUR][1000 genomes]
rs73168758	0.87[EUR][1000 genomes]
rs73170834	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73170852	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73170857	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73170864	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73172903	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7357113	0.86[ASN][1000 genomes]
rs740946	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7777243	0.84[EUR][1000 genomes]
rs7777269	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7777621	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7780835	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7781664	0.87[EUR][1000 genomes]
rs7784950	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7787342	0.86[ASN][1000 genomes]
rs7801209	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7810982	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917718	0.87[EUR][1000 genomes]
rs917725	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9690769	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69106200-69121600	Weak transcription	Fetal Kidney	kidney
2	chr7:69109400-69121800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:69111000-69121800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:69114400-69121800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:69114800-69121400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:69116800-69122600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:69118000-69120800	Enhancers	Fetal Heart	heart
8	chr7:69118000-69123000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:69118000-69125200	Enhancers	Fetal Lung	lung
10	chr7:69118200-69121800	Weak transcription	Fetal Intestine Small	intestine
11	chr7:69118200-69122800	Enhancers	Brain Germinal Matrix	brain
12	chr7:69118400-69121000	Enhancers	Primary B cells from cord blood	blood
13	chr7:69118600-69120800	Enhancers	Fetal Thymus	thymus
14	chr7:69118600-69121200	Enhancers	Brain Anterior Caudate	brain
15	chr7:69118600-69121200	Enhancers	Left Ventricle	heart
16	chr7:69118600-69122600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:69118600-69122600	Enhancers	Fetal Muscle Leg	muscle
18	chr7:69118800-69121200	Enhancers	Ovary	ovary
19	chr7:69118800-69122600	Enhancers	Brain Hippocampus Middle	brain
20	chr7:69119000-69120600	Enhancers	Fetal Brain Male	brain
21	chr7:69119000-69121200	Enhancers	Fetal Stomach	stomach
22	chr7:69119000-69122000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr7:69119000-69123000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr7:69119000-69123000	Enhancers	Placenta	Placenta
25	chr7:69119200-69120400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:69119200-69120800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr7:69119200-69121200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr7:69119200-69121200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr7:69119200-69121800	Enhancers	Stomach Smooth Muscle	stomach
30	chr7:69119200-69122400	Enhancers	Colon Smooth Muscle	Colon
31	chr7:69119200-69123200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr7:69119200-69123200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr7:69119200-69123200	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr7:69119200-69123400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr7:69119400-69120400	Weak transcription	Lung	lung
36	chr7:69119400-69120400	Weak transcription	Psoas Muscle	Psoas
37	chr7:69119400-69121000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr7:69119400-69121000	Enhancers	Fetal Brain Female	brain
39	chr7:69119400-69122000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:69119600-69120800	Enhancers	Primary B cells from peripheral blood	blood
41	chr7:69119600-69121200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr7:69119600-69121800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:69119600-69122600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr7:69119600-69122600	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr7:69119600-69122600	Enhancers	Right Atrium	heart
46	chr7:69119600-69124800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:69119800-69120600	Enhancers	Aorta	Aorta
48	chr7:69119800-69120800	Enhancers	Esophagus	oesophagus
49	chr7:69119800-69121600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr7:69119800-69121800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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