Variant report

Variant	rs11771751
Chromosome Location	chr7:69250306-69250307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:157)

rs_ID	r²[population]
rs1000874	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10085600	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1017113	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10215914	0.85[EUR][1000 genomes]
rs10216097	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216186	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10229336	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10229578	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10229588	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10230356	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10230750	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10233869	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10234831	0.83[EUR][1000 genomes]
rs10235098	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10236103	0.97[EUR][1000 genomes]
rs10238307	1.00[EUR][1000 genomes]
rs10239569	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10240462	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10242206	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10243408	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10244001	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10244128	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10244247	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10244885	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245749	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10247386	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10248237	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10254086	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255563	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10256512	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10256943	1.00[EUR][1000 genomes]
rs10257587	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10258846	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10259028	0.81[EUR][1000 genomes]
rs10261380	1.00[EUR][1000 genomes]
rs10263467	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10268729	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269267	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274099	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10274419	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275112	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275721	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276322	0.81[EUR][1000 genomes]
rs10278001	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10278978	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279669	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279708	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10280018	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs10452705	0.97[EUR][1000 genomes]
rs10452739	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10487943	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950193	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11762049	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11762487	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11763426	0.85[EUR][1000 genomes]
rs11764277	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11764717	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11764911	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11766980	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11768151	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11769033	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769390	0.81[EUR][1000 genomes]
rs11769738	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770241	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11771768	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11771899	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11772602	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975481	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11975506	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11979745	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333653	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17140755	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17140759	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17140783	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17140817	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17140884	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17140938	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141032	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17350805	0.80[EUR][1000 genomes]
rs17353920	0.87[EUR][1000 genomes]
rs17457910	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17458713	0.87[EUR][1000 genomes]
rs2052124	0.87[EUR][1000 genomes]
rs2068718	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28393394	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28493290	1.00[EUR][1000 genomes]
rs28496072	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28502437	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28577243	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28630917	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2865804	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28812289	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28864527	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34080361	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3735260	0.84[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap]
rs3800979	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41379648	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4305786	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55654955	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55756263	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55880824	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56405888	0.85[EUR][1000 genomes]
rs56800568	0.90[EUR][1000 genomes]
rs57493471	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58626042	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58666988	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58863846	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61370051	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61424317	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6460525	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6945524	0.87[EUR][1000 genomes]
rs6947326	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6948174	0.81[EUR][1000 genomes]
rs6950638	1.00[EUR][1000 genomes]
rs6951770	0.97[EUR][1000 genomes]
rs6958450	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958714	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6961682	0.81[EUR][1000 genomes]
rs6962237	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6962338	0.87[EUR][1000 genomes]
rs6967788	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968426	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6975211	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6977472	0.97[EUR][1000 genomes]
rs6978818	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6980305	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717266	1.00[EUR][1000 genomes]
rs719294	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73154605	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164795	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73166559	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73167506	1.00[EUR][1000 genomes]
rs73168739	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73168740	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73168747	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73168758	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73170834	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73170852	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73170857	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73170864	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73172903	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740946	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777243	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7777269	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7777621	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7780835	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781664	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7784950	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801209	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7806413	0.85[AMR][1000 genomes]
rs7810982	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs917718	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs917725	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9690738	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9690769	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69245400-69250800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr7:69245600-69250800	Enhancers	Brain Germinal Matrix	brain
3	chr7:69246000-69250800	Enhancers	Adipose Nuclei	Adipose
4	chr7:69246200-69250600	Enhancers	Fetal Brain Female	brain
5	chr7:69246600-69252800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:69246600-69253200	Weak transcription	HSMMtube	muscle
7	chr7:69246800-69250800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:69246800-69253200	Weak transcription	Fetal Kidney	kidney
9	chr7:69246800-69256200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:69247000-69252200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:69247000-69264400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:69247200-69262200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:69248200-69250600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:69248200-69251600	Weak transcription	GM12878-XiMat	blood
15	chr7:69248400-69252600	Weak transcription	Left Ventricle	heart
16	chr7:69248400-69252800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:69248800-69251000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:69249000-69250600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:69249200-69253200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr7:69249200-69253200	Weak transcription	NHDF-Ad	bronchial
21	chr7:69249400-69250400	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:69249400-69252600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:69249400-69253200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:69249600-69252000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr7:69249600-69252000	Weak transcription	Psoas Muscle	Psoas
26	chr7:69249600-69252600	Weak transcription	Brain Anterior Caudate	brain
27	chr7:69249600-69253000	Weak transcription	Fetal Heart	heart
28	chr7:69249600-69254000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:69249600-69255800	Weak transcription	Right Atrium	heart
30	chr7:69249600-69258800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:69249800-69252800	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:69249800-69252800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr7:69249800-69252800	Weak transcription	Brain Substantia Nigra	brain
34	chr7:69249800-69252800	Weak transcription	Fetal Lung	lung
35	chr7:69249800-69252800	Weak transcription	Fetal Stomach	stomach
36	chr7:69249800-69269600	Weak transcription	Brain Angular Gyrus	brain
37	chr7:69250000-69252600	Weak transcription	Fetal Muscle Leg	muscle
38	chr7:69250000-69252800	Weak transcription	Ovary	ovary
39	chr7:69250000-69253000	Weak transcription	Fetal Brain Male	brain
40	chr7:69250000-69253200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:69250000-69253200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr7:69250200-69253400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:69250200-69261200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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