Variant report

Variant	rs11762049
Chromosome Location	chr7:69203353-69203354
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69198010..69200817-chr7:69202964..69204701,2	K562	blood:

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:147)

rs_ID	r²[population]
rs1000874	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10085600	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10215914	0.85[EUR][1000 genomes]
rs10216097	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10216186	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10229336	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10229578	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10229588	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10230356	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10230750	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10233869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10234831	0.83[EUR][1000 genomes]
rs10235098	0.87[EUR][1000 genomes]
rs10236103	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10238307	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10239569	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10240462	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10242206	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10243408	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10244001	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10244128	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10244247	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10244885	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10245690	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10245749	0.87[EUR][1000 genomes]
rs10247386	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10248237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10254086	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10255563	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10256309	0.90[AMR][1000 genomes]
rs10256512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10256943	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10257587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10258846	0.87[EUR][1000 genomes]
rs10261380	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10263467	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10268729	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10269267	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10272781	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10274099	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10274419	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10275112	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10275721	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10278001	0.87[EUR][1000 genomes]
rs10278978	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10279669	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10279708	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10280018	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10452705	0.97[EUR][1000 genomes]
rs10452739	0.87[EUR][1000 genomes]
rs10487943	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10950193	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11762487	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11763426	0.85[EUR][1000 genomes]
rs11764277	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11764717	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11769033	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11769738	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11770241	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11771751	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11771899	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11772602	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11975481	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11975506	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11979745	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12333653	0.87[EUR][1000 genomes]
rs17140755	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17140759	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17140783	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17140817	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17140884	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17140938	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17141032	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17350805	0.80[EUR][1000 genomes]
rs17353920	0.87[EUR][1000 genomes]
rs17457910	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17458713	0.87[EUR][1000 genomes]
rs2052124	0.87[EUR][1000 genomes]
rs2068718	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28393394	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28493290	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28496072	0.87[EUR][1000 genomes]
rs28502437	0.87[EUR][1000 genomes]
rs28577243	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2865804	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28812289	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28864527	0.87[EUR][1000 genomes]
rs34080361	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3735260	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3800979	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41379648	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4305786	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55654955	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55756263	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55880824	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56405888	0.85[EUR][1000 genomes]
rs56800568	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57493471	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58626042	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58666988	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58863846	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61370051	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61424317	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61744589	0.90[AMR][1000 genomes]
rs6460525	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6945524	0.87[EUR][1000 genomes]
rs6947326	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6950638	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6951770	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6958450	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6958714	0.87[EUR][1000 genomes]
rs6962237	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6962338	0.87[EUR][1000 genomes]
rs6967788	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6968426	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6975211	0.87[EUR][1000 genomes]
rs6977472	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6978818	0.87[EUR][1000 genomes]
rs6980305	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs717266	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs719294	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73154605	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73164795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73166559	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73167506	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168739	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73168740	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73168747	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73168758	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73170834	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73170852	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73170857	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73170864	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73172903	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs740946	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7777243	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7777269	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7777621	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7780835	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7781664	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7784950	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7801209	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7810982	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs917718	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs917725	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9690738	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9690769	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv3394718	chr7:69194534-69238432	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1027399	chr7:69197011-69239721	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv538918	chr7:69197011-69239721	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69193400-69204200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:69193800-69203800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:69197600-69203400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:69198000-69203400	Weak transcription	A549	lung
5	chr7:69198200-69203400	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:69198200-69203400	Weak transcription	Fetal Intestine Small	intestine
7	chr7:69198400-69203400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:69199600-69203400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:69199800-69203400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:69200000-69203400	Weak transcription	Pancreas	Pancrea
11	chr7:69200000-69205400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:69200400-69206000	Enhancers	Brain Germinal Matrix	brain
13	chr7:69200600-69205400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:69200600-69206200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:69200800-69203400	Weak transcription	Right Atrium	heart
16	chr7:69200800-69205200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:69200800-69205400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:69201000-69205200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:69201200-69205200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:69201200-69205200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:69201200-69205400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr7:69201800-69203400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:69201800-69204000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr7:69202000-69203400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:69202000-69206000	Enhancers	Fetal Brain Female	brain
26	chr7:69202200-69204000	Enhancers	H1 Cell Line	embryonic stem cell
27	chr7:69202200-69205400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:69202200-69205600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:69202400-69203600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr7:69202400-69203800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr7:69202400-69204200	Enhancers	Ovary	ovary
32	chr7:69202400-69205400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:69202400-69205400	Enhancers	Primary hematopoietic stem cells	blood
34	chr7:69202400-69205400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr7:69202400-69205800	Enhancers	Fetal Muscle Leg	muscle
36	chr7:69202400-69206000	Enhancers	Fetal Thymus	thymus
37	chr7:69202600-69205000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:69202600-69205400	Enhancers	Colon Smooth Muscle	Colon
39	chr7:69202800-69204800	Enhancers	Adipose Nuclei	Adipose
40	chr7:69202800-69205200	Enhancers	Fetal Brain Male	brain
41	chr7:69202800-69205400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:69202800-69205400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr7:69202800-69205400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:69202800-69205400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:69202800-69205400	Enhancers	Fetal Heart	heart
46	chr7:69202800-69205400	Enhancers	Stomach Smooth Muscle	stomach
47	chr7:69202800-69205400	Flanking Active TSS	GM12878-XiMat	blood
48	chr7:69202800-69206000	Enhancers	Fetal Stomach	stomach
49	chr7:69203000-69203800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:69203000-69204000	Enhancers	Fetal Kidney	kidney

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