Variant report

Variant	rs17350805
Chromosome Location	chr7:69091927-69091928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69090323..69092550-chr7:69102421..69104157,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1000874	0.80[EUR][1000 genomes]
rs10216097	0.83[EUR][1000 genomes]
rs10229578	0.80[EUR][1000 genomes]
rs10233869	0.80[EUR][1000 genomes]
rs10234831	0.83[EUR][1000 genomes]
rs10238307	0.80[EUR][1000 genomes]
rs10239569	0.83[EUR][1000 genomes]
rs10243408	0.80[EUR][1000 genomes]
rs10245690	0.83[EUR][1000 genomes]
rs10248237	0.80[EUR][1000 genomes]
rs10256512	0.80[EUR][1000 genomes]
rs10256943	0.80[EUR][1000 genomes]
rs10257587	0.80[EUR][1000 genomes]
rs10261380	0.80[EUR][1000 genomes]
rs10272781	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10274419	0.83[EUR][1000 genomes]
rs10275721	0.83[EUR][1000 genomes]
rs10278978	0.83[EUR][1000 genomes]
rs10279669	0.83[EUR][1000 genomes]
rs10487943	0.83[EUR][1000 genomes]
rs11762049	0.80[EUR][1000 genomes]
rs11769033	0.80[EUR][1000 genomes]
rs11771751	0.80[EUR][1000 genomes]
rs11771899	0.83[EUR][1000 genomes]
rs17140755	0.80[EUR][1000 genomes]
rs17140759	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17140783	0.80[EUR][1000 genomes]
rs17140817	0.80[EUR][1000 genomes]
rs17140938	0.83[EUR][1000 genomes]
rs17353920	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17457910	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458713	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052124	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2068718	0.80[EUR][1000 genomes]
rs28493290	0.80[EUR][1000 genomes]
rs2865804	0.80[EUR][1000 genomes]
rs28812289	0.83[EUR][1000 genomes]
rs34080361	0.80[EUR][1000 genomes]
rs3800979	0.80[EUR][1000 genomes]
rs58666988	0.80[EUR][1000 genomes]
rs6945524	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950638	0.80[EUR][1000 genomes]
rs6958450	0.80[EUR][1000 genomes]
rs6962338	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717266	0.80[EUR][1000 genomes]
rs719294	0.80[EUR][1000 genomes]
rs73154605	0.83[EUR][1000 genomes]
rs73164795	0.80[EUR][1000 genomes]
rs73167506	0.80[EUR][1000 genomes]
rs73168739	0.80[EUR][1000 genomes]
rs73168740	0.83[EUR][1000 genomes]
rs73170852	0.80[EUR][1000 genomes]
rs73170857	0.80[EUR][1000 genomes]
rs73170864	0.80[EUR][1000 genomes]
rs740946	0.80[EUR][1000 genomes]
rs7777269	0.80[EUR][1000 genomes]
rs7777621	0.80[EUR][1000 genomes]
rs7780835	0.83[EUR][1000 genomes]
rs7784950	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69076400-69095400	Weak transcription	Fetal Stomach	stomach
2	chr7:69079800-69093600	Weak transcription	Brain Substantia Nigra	brain
3	chr7:69080000-69095200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:69085000-69095400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:69085200-69095000	Weak transcription	Fetal Lung	lung
6	chr7:69086000-69096400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:69086600-69092200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:69088200-69092600	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:69088400-69094600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:69088400-69095000	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:69088400-69097800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr7:69088600-69095000	Weak transcription	Ovary	ovary
13	chr7:69088600-69095000	Weak transcription	Right Atrium	heart
14	chr7:69089200-69092000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:69089800-69093000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:69089800-69093800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:69089800-69094400	Weak transcription	GM12878-XiMat	blood
18	chr7:69089800-69100400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:69090200-69093200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:69090400-69092600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:69090400-69093000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:69090400-69093600	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:69090400-69095400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:69090400-69096400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:69090400-69096400	Weak transcription	Fetal Brain Female	brain
26	chr7:69090400-69100400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:69090600-69092200	Enhancers	Brain Germinal Matrix	brain
28	chr7:69091000-69095200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:69091200-69093600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:69091200-69094600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:69091600-69095400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr7:69091600-69096800	Weak transcription	Fetal Brain Male	brain

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