Variant report

Variant	rs11764911
Chromosome Location	chr7:69470248-69470249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69423156..69425237-chr7:69469774..69471942,2	MCF-7	breast:

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1000874	0.81[EUR][1000 genomes]
rs10081305	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10085908	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10156142	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1017113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10215914	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10216097	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10216186	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10227424	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10228786	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10229336	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10234106	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10234121	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10235098	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10238049	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10239569	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10243408	0.81[EUR][1000 genomes]
rs10245690	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10245749	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10248401	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10248606	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10251433	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10254871	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10256093	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10258846	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10259028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262102	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10266802	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10272781	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10274419	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10275721	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10276322	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276912	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10278001	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10278978	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10279669	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10281537	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10452739	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10487943	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10950193	0.91[EUR][1000 genomes]
rs11762487	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11763426	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11764141	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11764397	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11766424	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11766980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768151	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11769033	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11769390	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770241	0.91[EUR][1000 genomes]
rs11770380	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11770466	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11770695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11771751	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11771768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11771899	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12333653	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13362851	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13362865	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs13437638	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17140938	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17141032	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17141168	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141181	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141191	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141193	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17361825	0.81[EUR][1000 genomes]
rs17457910	1.00[CEU][hapmap]
rs28393394	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28433534	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28464032	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28489338	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28496072	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28502437	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28582872	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28617759	0.82[EUR][1000 genomes]
rs28630917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657792	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2865804	0.81[EUR][1000 genomes]
rs2866276	0.82[EUR][1000 genomes]
rs28812289	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28864527	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34080361	0.81[EUR][1000 genomes]
rs35862187	0.84[EUR][1000 genomes]
rs3800979	0.81[EUR][1000 genomes]
rs4364526	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4557583	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56272534	0.85[ASN][1000 genomes]
rs56376205	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56405888	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56999082	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58666988	0.81[EUR][1000 genomes]
rs61370051	0.85[AMR][1000 genomes]
rs6944701	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6948174	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6950849	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6958450	0.81[EUR][1000 genomes]
rs6958714	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6961682	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967512	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6968426	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6976263	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6978818	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs719294	0.81[EUR][1000 genomes]
rs73154605	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73160193	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73168739	0.81[EUR][1000 genomes]
rs73168740	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73168747	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73168758	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73171731	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73172903	0.85[AMR][1000 genomes]
rs740946	0.81[EUR][1000 genomes]
rs7777243	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7777621	0.81[EUR][1000 genomes]
rs7780665	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7780835	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7781664	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7784950	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7796273	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7797662	0.91[EUR][1000 genomes]
rs7798890	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7805165	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7806413	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9690738	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9690769	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1028705	chr7:69453983-69524628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3359857	chr7:69467266-69470789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69455800-69470400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:69460200-69471600	Weak transcription	Fetal Intestine Small	intestine
3	chr7:69461400-69471000	Weak transcription	Right Atrium	heart
4	chr7:69461400-69471400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:69461400-69471600	Weak transcription	Right Ventricle	heart
6	chr7:69461600-69474000	Weak transcription	Psoas Muscle	Psoas
7	chr7:69466400-69471400	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:69466400-69475200	Weak transcription	Left Ventricle	heart
9	chr7:69466600-69470400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:69469400-69470800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:69469400-69471000	Enhancers	Thymus	Thymus
12	chr7:69469400-69472000	Enhancers	Primary B cells from peripheral blood	blood
13	chr7:69469600-69470400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr7:69469600-69472200	Enhancers	Fetal Thymus	thymus
15	chr7:69469800-69471000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:69470000-69470800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:69470000-69470800	Enhancers	Primary hematopoietic stem cells	blood
18	chr7:69470000-69470800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:69470000-69471000	Enhancers	Primary T cells from cord blood	blood
20	chr7:69470000-69472000	Flanking Active TSS	Dnd41	blood
21	chr7:69470000-69472200	Enhancers	Fetal Stomach	stomach
22	chr7:69470200-69470800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:69470200-69471000	Enhancers	Stomach Smooth Muscle	stomach
24	chr7:69470200-69471200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr7:69470200-69471200	Enhancers	Fetal Heart	heart
26	chr7:69470200-69472000	Flanking Active TSS	GM12878-XiMat	blood
27	chr7:69470200-69472200	Enhancers	Colon Smooth Muscle	Colon

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