Variant report

Variant	rs35862187
Chromosome Location	chr7:69625029-69625030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10081305	0.93[EUR][1000 genomes]
rs10085908	0.93[EUR][1000 genomes]
rs10156142	0.87[EUR][1000 genomes]
rs1017113	0.84[EUR][1000 genomes]
rs10227424	0.93[EUR][1000 genomes]
rs10228786	0.87[EUR][1000 genomes]
rs10234106	0.93[EUR][1000 genomes]
rs10234121	0.84[EUR][1000 genomes]
rs10238049	0.93[EUR][1000 genomes]
rs10248401	0.87[EUR][1000 genomes]
rs10248606	0.93[EUR][1000 genomes]
rs10251433	0.90[EUR][1000 genomes]
rs10254871	0.87[EUR][1000 genomes]
rs10256093	0.93[EUR][1000 genomes]
rs10259028	0.84[EUR][1000 genomes]
rs10262102	0.87[EUR][1000 genomes]
rs10266802	0.84[EUR][1000 genomes]
rs10276322	0.84[EUR][1000 genomes]
rs10276912	0.93[EUR][1000 genomes]
rs10281537	0.87[EUR][1000 genomes]
rs11764141	0.93[EUR][1000 genomes]
rs11764397	0.87[EUR][1000 genomes]
rs11764782	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764911	0.84[EUR][1000 genomes]
rs11766424	0.93[EUR][1000 genomes]
rs11766980	0.84[EUR][1000 genomes]
rs11768151	0.84[EUR][1000 genomes]
rs11769390	0.84[EUR][1000 genomes]
rs11770380	0.93[EUR][1000 genomes]
rs11770466	0.87[EUR][1000 genomes]
rs11770695	0.84[EUR][1000 genomes]
rs11770963	0.84[EUR][1000 genomes]
rs11771768	0.84[EUR][1000 genomes]
rs12113743	0.84[EUR][1000 genomes]
rs13437638	0.87[EUR][1000 genomes]
rs17141168	0.84[EUR][1000 genomes]
rs17141181	0.87[EUR][1000 genomes]
rs17141191	0.87[EUR][1000 genomes]
rs17141193	0.87[EUR][1000 genomes]
rs28433534	0.87[EUR][1000 genomes]
rs28464032	0.93[EUR][1000 genomes]
rs28489338	0.87[EUR][1000 genomes]
rs28582872	0.93[EUR][1000 genomes]
rs28617759	0.84[EUR][1000 genomes]
rs28630917	0.84[EUR][1000 genomes]
rs28657792	0.87[EUR][1000 genomes]
rs2866276	0.84[EUR][1000 genomes]
rs4364526	0.93[EUR][1000 genomes]
rs4557583	0.87[EUR][1000 genomes]
rs56063609	0.84[EUR][1000 genomes]
rs56376205	0.93[EUR][1000 genomes]
rs56388246	0.84[EUR][1000 genomes]
rs56410838	0.84[EUR][1000 genomes]
rs56999082	0.87[EUR][1000 genomes]
rs57370717	0.84[EUR][1000 genomes]
rs60847182	0.84[EUR][1000 genomes]
rs6944701	0.93[EUR][1000 genomes]
rs6948174	0.84[EUR][1000 genomes]
rs6950849	0.87[EUR][1000 genomes]
rs6961682	0.84[EUR][1000 genomes]
rs6967512	0.93[EUR][1000 genomes]
rs6976263	0.93[EUR][1000 genomes]
rs73160193	0.87[EUR][1000 genomes]
rs73171731	0.93[EUR][1000 genomes]
rs73173531	0.84[EUR][1000 genomes]
rs73173550	0.84[EUR][1000 genomes]
rs7780665	0.87[EUR][1000 genomes]
rs7796273	0.81[EUR][1000 genomes]
rs7797662	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798890	0.93[EUR][1000 genomes]
rs7805165	0.87[EUR][1000 genomes]
rs7806413	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69600000-69631000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69603400-69625600	Weak transcription	Fetal Brain Male	brain
3	chr7:69610200-69626400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:69616400-69625600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:69620000-69625800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:69620200-69625600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:69620200-69625800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:69620200-69628400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:69621200-69626000	Weak transcription	Fetal Lung	lung
10	chr7:69621600-69626400	Weak transcription	HSMM	muscle
11	chr7:69621600-69628400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:69623800-69625600	Enhancers	Fetal Brain Female	brain
13	chr7:69624600-69628400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links